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pacific-hake
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hake-assessment
:zap: :fish: Build the assessment document using latex and knitr
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reference new paper on emipirical weight-at-age data
#1059
kellijohnson-NOAA
closed
10 months ago
0
reference new paper on hake in Mexico
#1058
kellijohnson-NOAA
closed
10 months ago
1
Page numbers and volume for Vestfals et al. is available
#1057
kellijohnson-NOAA
closed
11 months ago
0
Page numbers and volume for Free et al. 2023
#1056
kellijohnson-NOAA
closed
11 months ago
0
Change `top.coh()` and cohort catch outputs to use MCMC medians
#1055
cgrandin
closed
11 months ago
3
Add function to create output files in format required by U.S. Species Information System (SIS) database
#1054
iantaylor-NOAA
opened
1 year ago
2
Make all legend text left justified for all plots
#1053
cgrandin
closed
1 year ago
3
Can we change 'thousand tonnes', 'thousand t', '000' t, '1,000 t' etc to kilotonnes (`kt`)
#1052
cgrandin
closed
1 year ago
3
`base_model` has both `catch.levels` and `catch_levels` as attached lists
#1051
cgrandin
closed
1 year ago
1
Rework calc_risk() into fetch_forecasts()
#1050
cgrandin
closed
11 months ago
1
Create JMC presentation
#1049
aaronmberger-nwfsc
closed
1 year ago
2
Tables i and j have wrong values for catch in row m
#1048
cgrandin
closed
1 year ago
1
Write script to automatically copy all model input/output files to Google Drive
#1047
cgrandin
closed
1 year ago
2
Alt-text algorithm breaks those plots where layout() is used
#1046
cgrandin
closed
1 year ago
3
Change plot_spr_illustration() to use MCMC so values match assessment
#1045
cgrandin
closed
1 year ago
1
Make a switch to turn off tagging when building
#1044
andrew-edwards
closed
1 year ago
1
Fix sensitivity code to change selectivity of fishery not survey
#1043
kellijohnson-NOAA
closed
10 months ago
0
Do analysis on number of samples necessary for the MCMC output
#1042
cgrandin
opened
1 year ago
1
SRG Appendix entries list
#1041
aaronmberger-nwfsc
closed
1 year ago
1
Use steepness h = 0.99 rather than 1.0
#1040
kellijohnson-NOAA
closed
10 months ago
3
Move Figure 55 (Historical assessments) to somewhere NOT next to retrospectives
#1039
kellijohnson-NOAA
closed
10 months ago
3
Remove emphasis/detail regarding 2010 cohort from document/presentations
#1038
kellijohnson-NOAA
closed
10 months ago
1
Add depth for the U.S. shoreside fleet to figure set
#1037
kellijohnson-NOAA
opened
1 year ago
2
Make it so the parameter names appear in the ShinyStan app
#1036
cgrandin
closed
8 months ago
0
Random typos etc.
#1035
andrew-edwards
closed
1 year ago
0
Add text about the spatial age-1 plot that comes from the survey team
#1034
cgrandin
closed
1 year ago
2
Make depth plots same scales (y-axis) for fishing and bottom depth
#1033
cgrandin
closed
11 months ago
1
Table 36 relative spawning biomass for 2023 is not correct
#1032
cgrandin
closed
1 year ago
1
Trevor's comments 2023 assessment
#1031
kellijohnson-NOAA
closed
1 year ago
5
Switch all knitr chunk names containing dots to dashes
#1030
cgrandin
closed
1 year ago
0
Extract the actual time-varying selectivity estimates instead of calculating them
#1029
cgrandin
closed
1 year ago
1
Bridging text question on new SS version
#1028
aaronmberger-nwfsc
closed
1 year ago
5
How to compile the presentations on the server
#1027
cgrandin
closed
1 year ago
1
Add '..-at-age' files to out-csv
#1026
aaronmberger-nwfsc
closed
1 year ago
1
SRG presentations
#1025
aaronmberger-nwfsc
closed
1 year ago
4
Retrospective sensitivity plots missing
#1024
cgrandin
closed
1 year ago
2
Caption regarding equilibrium conditions
#1023
kellijohnson-NOAA
closed
1 year ago
2
2023 exploratory run: increase survey input sample size
#1022
kellijohnson-NOAA
closed
1 year ago
3
Figure j (biomass projection plot) - worth just omitting the grey rectangle?
#1021
andrew-edwards
closed
1 year ago
1
Figure 16 (pesky bridging model results) has some messed up axes in pdf version
#1020
andrew-edwards
closed
1 year ago
3
Fix MCMC selectivity plot with individual draws from posterior
#1019
aaronmberger-nwfsc
closed
1 year ago
15
Table 16 - incorrect values
#1018
aaronmberger-nwfsc
closed
1 year ago
7
Allan wants baseline selectivity defined
#1017
kellijohnson-NOAA
closed
1 year ago
1
Defintion of baseline selectivity?
#1016
kellijohnson-NOAA
closed
1 year ago
1
2022 catch was roughly 320,000, not 325,000
#1015
cgrandin
closed
1 year ago
3
Missing references to figures in ES
#1014
cgrandin
closed
1 year ago
2
Overlapping footer, page 153
#1013
cgrandin
closed
1 year ago
8
Update references and text related to Hamel/Cope M prior sensitivity
#1012
aaronmberger-nwfsc
closed
1 year ago
1
Blank page at 151, just before sensitivity figures section
#1011
cgrandin
closed
1 year ago
0
Change "Unfished\nEquilibrium" to SB_0
#1010
kellijohnson-NOAA
closed
1 year ago
7
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