patrickbryant1 Umol issues

patrickbryant1 / Umol

Protein-ligand structure prediction

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issues

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Colab crashes due to error in Install dependencies step

#31 Sinsilcobio opened 7 hours ago
0
FileNotFoundError

#30 vecos1990 opened 1 week ago
0
[question]: Around training the model.

#29 alexanderbonnet opened 1 week ago
3
Predict ligand positions for large protein by multiple GPUs

#28 whl-git closed 1 week ago
1
conda enviroment problem

#27 sheng19331 opened 2 weeks ago
8
Error 'bash predict.sh'

#26 Dong-HoSeo closed 1 week ago
1
ValueError: setting an array element with a sequence. The requested array has an inhomogeneous shape after 1 dimensions. The detected shape was (1313,) + inhomogeneous part.

#25 sgrigna79 opened 2 weeks ago
1
Can Umol take 1 protein and 2 small molecules at the same time?

#24 Yang-Wang-2020 closed 1 week ago
1
'Config' object has no attribute 'define_bool_state'

#23 aliaclarkelsayed opened 1 month ago
4
Environment failed to resolve

#22 aliaclarkelsayed closed 1 month ago
2
Some question about giant Protein

#21 AlvinLeopold closed 2 months ago
1
How to output more predicted poses

#20 Zehui7Zhou opened 2 months ago
2
Error during conda env creation

#19 isty2e closed 1 week ago
1
Can ligand be inputted via sdf files instead of LIGAND_SMILES format?

#18 CykaZH closed 3 months ago
6
Docker to run it

#17 smilenaderi opened 4 months ago
6
colab notebook error in prediction step

#16 biotech70 closed 4 months ago
7
Selection of the interaction sites and pLDTT score

#15 velocirraptor23 closed 5 months ago
4
ValueError: operands could not be broadcast together with shapes (19,19) (2861,2861)

#14 AlvinLeopold closed 5 months ago
3
When run the 'predict.sh', how to use GPU to accelerate it

#13 CykaZH closed 5 months ago
1
colab Umol "predict the protein-ligand complex structure" cell

#12 FJ0M closed 4 months ago
1
Generate pocket indices file

#11 mainguyenanhvu closed 6 months ago
0
FutureWarning: jax.tree_flatten is deprecated, and will be removed in a future release. Use jax.tree_util.tree_flatten instead.

#10 mainguyenanhvu closed 6 months ago
1
Target pos

#9 LiviaPham closed 6 months ago
8
Different models

#8 velocirraptor23 closed 6 months ago
1
IndexError: list index out of range, while created a new protein

#7 velocirraptor23 closed 6 months ago
6
Create environemnt.yml

#6 mainguyenanhvu closed 7 months ago
5
limit in protein length or msa sequence number?

#5 Yogesh1-11 closed 7 months ago
3
Multiple chains in protein sequence

#4 rajatpunia closed 7 months ago
1
Training Protocol

#3 hypefolder closed 7 months ago
1
Predict the protein-ligand structure Error

#2 SarahKnapp1 closed 7 months ago
1
Sequence Length Limit

#1 drewnutt closed 8 months ago
1