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paulshuker
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coppafish
COmbinatorial Padlock-Probe-Amplified Fluorescence In Situ Hybridization
https://paulshuker.github.io/coppafish/
MIT License
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OMP dot product scores diagnostic
#123
paulshuker
opened
1 day ago
0
Constant OMP mean spot
#122
paulshuker
opened
1 day ago
0
Overflow cast to uint8 for fused dapi image
#121
paulshuker
opened
3 days ago
0
Multi-thread Viewer subplots
#120
paulshuker
opened
1 week ago
0
Viewer Improvements
#119
paulshuker
opened
1 week ago
0
Fix `view_codes` Viewer call spots subplot
#118
paulshuker
opened
1 week ago
0
Fix coppafish CLI
#117
paulshuker
opened
1 week ago
0
View registered spot colours diagnostic
#116
paulshuker
opened
2 weeks ago
0
faster get spot colours by vectorisation + better unit test
#115
paulshuker
closed
2 weeks ago
0
Vectorised get spot colours
#114
paulshuker
closed
2 weeks ago
0
103 filter image checkpoint
#113
paulshuker
closed
2 weeks ago
0
Fred
#112
paulshuker
opened
2 weeks ago
0
Updated many software packages, docs updates, and Python 3.11 support
#111
paulshuker
closed
2 weeks ago
0
Rename coppafish
#110
paulshuker
opened
2 weeks ago
0
107 find spots plot
#109
paulshuker
closed
2 weeks ago
0
Rely on skimage's Wiener deconvolution
#108
paulshuker
opened
2 weeks ago
0
Find spots plot
#107
paulshuker
closed
2 weeks ago
0
Fred
#106
paulshuker
closed
2 weeks ago
0
Fix register progress bar
#104
paulshuker
closed
2 weeks ago
0
Filter image checkpoint
#103
paulshuker
closed
2 weeks ago
0
Get spot colours GPU support
#102
paulshuker
opened
3 weeks ago
0
Checkpoint register pipeline
#101
paulshuker
opened
3 weeks ago
0
Optimise spot detection
#100
paulshuker
opened
3 weeks ago
0
Latest v1 updates
#99
paulshuker
closed
3 weeks ago
0
Single z plane support
#98
paulshuker
opened
3 weeks ago
0
0.10.8 omp checkpointing patch
#97
paulshuker
closed
3 weeks ago
0
call spots + ref spots variables now saved as zarrays to save memory …
#96
paulshuker
closed
3 weeks ago
0
Notebook zarray strict datatypes
#95
paulshuker
closed
3 weeks ago
0
Save call spots/ref spots results as zarrays
#94
paulshuker
closed
3 weeks ago
0
Yuta changes
#93
paulshuker
closed
1 month ago
0
Export to pciSeq fixed + added to docs + a ton of import simplifications
#92
paulshuker
closed
1 month ago
0
86 subpixel spot colours
#91
paulshuker
closed
1 month ago
0
Web-based Viewer
#90
paulshuker
opened
1 month ago
0
Update export_to_pciseq for coppafish v1
#89
paulshuker
closed
1 month ago
0
Check score thresholding of function export_to_pciseq in 0.10.7
#88
paulshuker
closed
1 month ago
0
Update to napari>=0.5.0
#87
paulshuker
closed
2 weeks ago
0
Subpixel spot colours
#86
paulshuker
closed
1 month ago
0
Yuta
#85
paulshuker
opened
1 month ago
0
call_spot variables are all 32-bit to reduce notebook size
#84
paulshuker
closed
1 month ago
0
Call spots compression
#83
paulshuker
closed
1 month ago
0
60 extract directory metadata
#82
paulshuker
closed
1 month ago
0
Fred
#81
paulshuker
closed
1 month ago
0
Create bug.md issue template
#80
paulshuker
closed
1 month ago
0
new detect spots pdf progress
#79
paulshuker
closed
1 month ago
0
Cassandra
#78
paulshuker
opened
1 month ago
0
Velma
#77
paulshuker
opened
1 month ago
0
Daphne
#76
paulshuker
opened
1 month ago
0
Birdo
#75
paulshuker
opened
1 month ago
0
Yoshi
#74
paulshuker
opened
1 month ago
0
Taylor
#73
paulshuker
opened
1 month ago
0
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