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paulshuker
/
coppafish
COmbinatorial Padlock-Probe-Amplified Fluorescence In Situ Hybridization
https://paulshuker.github.io/coppafish/
MIT License
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Shaggy
#72
paulshuker
opened
1 month ago
0
Create new-feature.md issue template
#71
paulshuker
closed
1 month ago
0
Create improvement.md issue template
#70
paulshuker
closed
1 month ago
0
better comments + auto thresh computed in find_spots
#69
paulshuker
closed
1 month ago
0
Set auto-threshold during find spots
#68
paulshuker
closed
1 month ago
0
Pre-compile OMP code
#67
paulshuker
opened
1 month ago
0
Fred
#66
paulshuker
opened
1 month ago
1
Issue #56 remove saved absolute file paths
#65
paulshuker
closed
1 month ago
0
Python 3.11 Support
#64
paulshuker
closed
2 weeks ago
0
Update to numpy v2
#63
paulshuker
opened
1 month ago
0
Wiener -> Richardson-Lucy filtering
#62
paulshuker
opened
1 month ago
0
PDF diagnostics for register
#61
paulshuker
opened
1 month ago
0
Extract directory metadata
#60
paulshuker
closed
1 month ago
0
Support for n_channels > 9
#59
paulshuker
opened
1 month ago
0
Backwards Compatibility Tracker
#58
paulshuker
closed
1 month ago
0
Compatibility tracker
#57
paulshuker
closed
1 month ago
0
Remove notebook absolute file paths
#56
paulshuker
closed
1 month ago
0
Detect spots pdf view
#55
paulshuker
closed
1 month ago
0
Viewer 2D
#54
paulshuker
closed
5 months ago
0
Dev pull
#53
paulshuker
closed
5 months ago
0
Dev
#52
paulshuker
closed
5 months ago
0
Omp optimisation
#51
paulshuker
closed
5 months ago
0
Pulling Reilly dev
#50
paulshuker
closed
5 months ago
0
docs refresh
#49
paulshuker
closed
6 months ago
0
dev -> docs
#48
paulshuker
closed
7 months ago
0
Latest Reilly Dev Merge
#47
paulshuker
closed
7 months ago
0
Alpha stage
#46
reillytilbury
closed
7 months ago
1
Docs
#45
paulshuker
closed
7 months ago
0
Docs/readme update
#44
paulshuker
closed
8 months ago
0
Docs, clean up, and dark theme for gene legend
#43
paulshuker
closed
8 months ago
0
Detect spots vectorise
#42
paulshuker
closed
8 months ago
0
Docs/readme update + repo cleaning
#41
paulshuker
closed
8 months ago
0
OMP using pytorch + code base cleaning
#40
paulshuker
closed
8 months ago
0
New docs initialisation
#39
paulshuker
closed
8 months ago
0
Notebook comments
#38
paulshuker
closed
8 months ago
0
Better indexing for find_spots
#37
paulshuker
closed
9 months ago
0
Arbitrary tile size
#36
paulshuker
closed
9 months ago
0
Indexing improvements in extract and filter
#35
paulshuker
closed
9 months ago
0
Filter refactor
#34
paulshuker
closed
9 months ago
0
Improved pdf pixel hists
#33
paulshuker
closed
9 months ago
0
Improved pdf pixel hists
#32
paulshuker
closed
9 months ago
0
bled codes are normalised outside of spot for loop
#31
paulshuker
closed
9 months ago
0
Viewer related bug fixes
#30
paulshuker
closed
9 months ago
0
82 multiplying then dividing by weight code simplification
#29
paulshuker
closed
9 months ago
0
Pdf builder tweaks
#28
paulshuker
closed
9 months ago
0
Latest alpha update
#27
paulshuker
closed
10 months ago
0
Filter section
#26
paulshuker
closed
10 months ago
0
Filter section
#25
paulshuker
closed
10 months ago
0
Tile storage (extract + find_spots)
#24
paulshuker
closed
10 months ago
0
Optimisations branch close
#23
paulshuker
closed
11 months ago
0
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