issues
search
pepkit
/
pipestat
Pipeline results reporting package
https://pep.databio.org/pipestat/
BSD 2-Clause "Simplified" License
4
stars
2
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
No Schema Supplied should offer more information
#157
donaldcampbelljr
closed
6 months ago
1
What is multi_pipelines and when should it be used?
#156
nsheff
closed
5 months ago
2
multi pipelines error with only a single pipeline is confusing
#155
nsheff
closed
7 months ago
0
Fix quickstart example
#154
simeoncarstens
closed
7 months ago
0
Quickstart example does not work
#153
simeoncarstens
closed
6 months ago
1
v0.8.1 release
#152
donaldcampbelljr
closed
8 months ago
1
pipestat summarize: title of the html page is "Looper: None Summary"
#151
donaldcampbelljr
closed
8 months ago
0
pipestat summarize: project level items should not be placed in the same table as the sample level items
#150
donaldcampbelljr
closed
5 months ago
1
pipestat summarize: log files are not gathered when making a portable report
#149
donaldcampbelljr
closed
8 months ago
0
pipestat summarize: columns view should only show stats NOT objects
#148
donaldcampbelljr
closed
5 months ago
2
Adapt yacman v0.9.3
#147
nsheff
closed
8 months ago
2
Add warning to pytests if optional dependencies are not installed.
#146
donaldcampbelljr
closed
8 months ago
0
Update docs - ensure readme has correct container information and mention optional dependencies
#145
donaldcampbelljr
closed
8 months ago
1
Both PyYAML and oyaml in requirements
#144
vreuter
closed
5 months ago
5
Pypiper + pipestat: minimal dependencies set
#143
vreuter
closed
8 months ago
2
v0.8.0 release
#142
donaldcampbelljr
closed
8 months ago
1
Set index if specified in output schema
#141
donaldcampbelljr
closed
8 months ago
2
Add portable report
#140
donaldcampbelljr
closed
8 months ago
6
pipestat summarize: add portability/zipping
#139
donaldcampbelljr
closed
8 months ago
4
pipestat summarize: objects drop down shows all objects but should only show sample-level
#138
donaldcampbelljr
closed
8 months ago
0
pipestat summarize: fastqc links do not work
#137
donaldcampbelljr
closed
8 months ago
2
v0.7.0 release
#136
donaldcampbelljr
closed
8 months ago
2
Dev sqlmodel 0 14
#135
donaldcampbelljr
closed
8 months ago
1
Dev pipestat iterator 97
#134
donaldcampbelljr
closed
8 months ago
1
Objects YAML button does not point to correct file
#133
donaldcampbelljr
closed
8 months ago
0
Implement fetching schemas from schema.databio.org
#132
donaldcampbelljr
closed
9 months ago
1
Fix reporting in pipestat summarize
#131
donaldcampbelljr
closed
9 months ago
1
pipestat summarize missing some functionality of looper report
#130
donaldcampbelljr
closed
9 months ago
2
naming of optional dependency packages
#129
nsheff
closed
9 months ago
3
Revert "Fixed #106"
#128
donaldcampbelljr
closed
10 months ago
2
Updating to sqlmodel 0.0.14
#127
nsheff
closed
8 months ago
3
Implement output schema fetching from https://schema.databio.org/
#126
donaldcampbelljr
closed
7 months ago
1
Using pipestat to report results to PEPhub
#125
nsheff
closed
2 months ago
1
Make sure pipestat 0.6.0 is working with Refgenie
#124
khoroshevskyi
closed
10 months ago
3
single result file per sample if given `{record_identifier}` in the result_file_path
#123
donaldcampbelljr
closed
10 months ago
1
jinja2 requirement not declared, refgenie fails to run
#122
ialbert
closed
10 months ago
4
Updated requirements
#121
khoroshevskyi
closed
10 months ago
1
Pipestat should be able to create a results file for an individual sample.
#120
donaldcampbelljr
closed
9 months ago
1
Using JSON schema as output schema breaks pipestat summarize
#119
donaldcampbelljr
closed
9 months ago
1
incorrect version bound specification
#118
nsheff
closed
11 months ago
2
Installing optional dependencies per docs is not working
#117
nsheff
closed
9 months ago
6
Streamline optional dependency sqlmodel
#116
nsheff
closed
8 months ago
2
Use RecordNotFoundError exception when record is not found.
#115
nsheff
closed
9 months ago
2
Align environment vars to have the same prefix
#114
donaldcampbelljr
closed
11 months ago
0
Fix properties
#113
donaldcampbelljr
closed
9 months ago
1
Polish pytests with using fixtures and removing redundancy
#112
donaldcampbelljr
closed
11 months ago
1
DBbackend does not remove record when last result identifier is deleted.
#111
donaldcampbelljr
closed
8 months ago
1
Clear status needs an implemented pytest
#110
donaldcampbelljr
closed
9 months ago
2
Align pipestat output_schema to be a true JSON schema
#109
donaldcampbelljr
closed
11 months ago
1
Dev 99 103 api refactor
#108
donaldcampbelljr
closed
11 months ago
6
Previous
Next