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peterk87
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nf-flu
Influenza genome analysis Nextflow workflow
MIT License
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Modifications needed to assemble Influenza C genomes?
#20
hkunerth
opened
4 weeks ago
2
parse_influenza_blast_results.py has two question
#19
chendongo
closed
4 months ago
1
[BUG]: failed profile test
#18
egenomics
closed
8 months ago
1
Fixed Bug: handle subtype in lower case
#17
nhhaidee
closed
1 year ago
2
Add option to limit the number of columns in mismatch report
#16
nhhaidee
closed
2 years ago
0
[BUG]: Different processes between Illumina and Nanopore platforms
#15
kdl480
opened
2 years ago
3
Prepare version 3 release for Nanopore analysis
#14
peterk87
closed
2 years ago
5
Revert "Workflow for nanopore data"
#13
peterk87
closed
2 years ago
2
Nanopore sample sheet can specify paths to either single files or directories; different reads for the same sample should be merged
#12
peterk87
closed
2 years ago
0
Error executing process > 'CHECK_SAMPLE_SHEET (1)'
#11
AaronHY
opened
2 years ago
1
Change samplesheet to specify samples from difference Nanopore runs
#10
nhhaidee
closed
2 years ago
0
Consensus sequences from IRMA and read mapping/variant calling should be compared using global alignment.
#9
nhhaidee
opened
2 years ago
0
Workflow for nanopore data
#8
nhhaidee
closed
2 years ago
0
Influenza B specimen causes `parse_influenza_blast_results.py` to crash
#7
fanninpm
opened
2 years ago
2
Add check that IRMA consensus sequences exist to fix #5
#6
peterk87
closed
3 years ago
0
Add check that gene segment consensus fasta exist before concatenation
#5
peterk87
closed
3 years ago
1
DSL-2 conversion, update IRMA to v1.0.2
#4
peterk87
closed
3 years ago
1
Adding an 'N' to no coverage positions of the consensus
#3
mnebroski
opened
3 years ago
9
Results summary table
#2
peterk87
closed
4 months ago
0
Add Singularity container for other processes
#1
peterk87
closed
4 years ago
0