peterk87 nf-villumina issues

peterk87 / nf-villumina

Generic viral Illumina sequence analysis pipeline

MIT License

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issues

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Update BLAST+ to latest version for compatibility with latest releases of NCBI nt

#25 peterk87 opened 1 year ago
0
Patch release for newer versions of Nextflow

#24 peterk87 closed 1 year ago
0
Fastp process exceeding running time limit

#23 mnebroski opened 2 years ago
3
Add BLASTN qcov_hsp_perc param

#22 peterk87 opened 3 years ago
0
Option for SISPA tag trimming step in workflow

#21 MatFish opened 3 years ago
6
Automatically run blast2xl on blast output of villumina

#20 MatFish opened 3 years ago
0
Pipeline execution error - Invalid method `call`

#19 mnebroski opened 4 years ago
1
Add metaviralSPAdes assembly

#18 peterk87 opened 4 years ago
1
Speed-up Centrifuge

#17 peterk87 opened 4 years ago
0
Added gz extension to filtered reads

#16 peterk87 closed 4 years ago
0
Filtered reads should be saved with .gz extension due to compression with pbgzip

#15 peterk87 closed 4 years ago
0
Protein-level assembly with PLASS

#14 peterk87 opened 4 years ago
0
Fix Singularity image pull issue

#13 peterk87 closed 4 years ago
0
Updates and migration to Nextflow v19.10.0 DSL-2

#12 peterk87 closed 4 years ago
0
Flag and skip tiny read sets

#11 peterk87 opened 4 years ago
0
Automatically run IRMA workflow if Influenza virus reads detected

#10 peterk87 opened 4 years ago
0
Add process for BLAST against user specified DB and BLAST report generation

#9 peterk87 opened 4 years ago
2
Investigate CAP3 for potential assembly improvement

#8 peterk87 opened 4 years ago
0
Add Krona graph output of all classification results for all samples

#7 peterk87 opened 4 years ago
0
Add Sankey visualization of classification results

#6 peterk87 opened 4 years ago
0
Add Kaiju classification

#5 peterk87 opened 4 years ago
0
Add reference mapping, variant calling and consensus sequence generation

#4 peterk87 opened 4 years ago
0
Add tiny test dataset and Kraken2/Centrifuge DBs for CI

#3 peterk87 opened 4 years ago
0
Add support for single end reads

#2 peterk87 opened 4 years ago
0
Update docs

#1 peterk87 opened 4 years ago
0