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phenopackets
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phenopacket-tools
An app and library for building, conversion, and validation of GA4GH Phenopackets.
http://phenopackets.org/phenopacket-tools/stable/
GNU General Public License v3.0
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VRS schema definitions mismatch
#196
v-rocheleau
opened
8 months ago
3
Warn about unused resources
#195
ielis
opened
9 months ago
1
Allow to perform simple phenopacket sanitation
#194
ielis
opened
10 months ago
0
Validate ISO8601 period strings
#193
ielis
closed
9 months ago
1
ISO 8601 Age strings should be checked
#192
pnrobinson
closed
9 months ago
0
Check phenotypic features are unique
#191
ielis
closed
10 months ago
0
Use phenol `2.0.2`
#190
ielis
closed
11 months ago
0
Add package with utility functions for working with protobuf messages
#189
ielis
closed
1 year ago
0
Enable JSON serialization for validation results
#188
ielis
closed
1 year ago
0
Unset field from v1 should not be set to a default instance in v2 during conversion
#187
ielis
closed
1 year ago
1
Empty `onset` field in `diseases`
#186
yaseminbridges
closed
1 year ago
1
Include VCF info field in v1 -> v2 conversion, improve handling of VCF filter fields in phenopacket builder
#185
ielis
closed
1 year ago
0
Missing `info` field in `VcfRecord`
#184
yaseminbridges
closed
1 year ago
2
Next development iteration
#183
ielis
closed
1 year ago
0
Update README.md
#182
ielis
closed
1 year ago
0
Release v1.0.0 RC3
#181
ielis
closed
1 year ago
0
example links broken
#180
pnrobinson
closed
1 year ago
2
Phenopackets Example links in documentation are broken
#179
dontseyit
closed
1 year ago
2
Improve handling of the default elements when converting from v1 to v2.
#178
ielis
closed
1 year ago
0
`dateOfBirth` field filled in phenopacket conversion
#177
yaseminbridges
closed
1 year ago
5
Update links to documentation in README (`develop`)
#176
ielis
closed
1 year ago
0
Update links to documentation in the `README.md`
#175
ielis
closed
1 year ago
0
Allow generating examples by snapshots, silence Maven.
#174
ielis
closed
1 year ago
0
Add `latest` and `stable` docs.
#173
ielis
closed
1 year ago
0
Add showcase of apps that use phenopacket-tools.
#172
ielis
closed
1 year ago
0
Improve format and element sniffing
#171
ielis
closed
1 year ago
0
Next development iteration
#170
ielis
closed
1 year ago
0
Release RC2
#169
ielis
closed
1 year ago
0
Add an example cohort.
#168
ielis
closed
1 year ago
0
Fix SNOMEDCT issues in pseudoexfoliation phenopacket.
#167
ielis
closed
1 year ago
0
Update dependency versions.
#166
ielis
closed
1 year ago
0
Update tutorial and the documentation
#165
ielis
closed
1 year ago
0
Fix varargs CLI options
#164
ielis
closed
1 year ago
0
Fixed incorrect CURIE form of an UBERON term in urothelial cancer example
#163
cmungall
closed
1 year ago
0
retinoblastoma example has LOINC IDs that lack a prefix
#162
cmungall
closed
1 year ago
1
pseudoexfoliation.json has both SNOMEDCT and SCTID namespaces
#161
cmungall
closed
1 year ago
2
Core is a transitive requirement of IO.
#160
ielis
closed
1 year ago
0
Increase granularity of static constructors for `TimeElement`s.
#159
ielis
closed
1 year ago
0
Add unspecified zygosity into AllelicState constants.
#158
ielis
closed
1 year ago
0
Work on documentation
#157
ielis
closed
1 year ago
0
Fix missing Phenopacket examples in documentation on a repo branch
#156
ielis
closed
1 year ago
1
Fix missing Phenopacket examples in documentation
#155
ielis
closed
1 year ago
0
Docs workflow fix
#154
hrshdhgd
closed
1 year ago
0
Broken links on http://phenopackets.org/phenopacket-tools/examples
#153
nlharris
closed
1 year ago
2
Release 1.0.0 RC1
#152
ielis
closed
1 year ago
0
Remove Maven wrapper files.
#151
ielis
closed
1 year ago
0
Fix various issues
#150
ielis
closed
1 year ago
0
Run `MetaDataValidator` in the base validation step.
#149
ielis
closed
1 year ago
0
Examples page does not resolve
#148
pnrobinson
closed
1 year ago
1
some example OntologyClasses lack a namespacePrefix entry in the metadata section
#147
cmungall
closed
1 year ago
0
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