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pni-lab
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PUMI
PUMI: neuroimaging Pipelines Using Modular workflow Integration
https://pumi.readthedocs.io/en/latest/
GNU General Public License v3.0
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Fix Slicer-problem
#141
khoffschlag
closed
1 year ago
0
Implement BidsApp-prototype & update Dockerfile
#140
khoffschlag
closed
1 year ago
1
Combine the BSD-license & GPL-license
#139
khoffschlag
opened
1 year ago
0
Structural Diffusion Weighted Imaging: mrtrix3 - Mohamad
#138
rkotikalapudi
opened
1 year ago
2
Docs test
#137
mberjano
closed
1 year ago
1
Docs test
#136
spisakt
closed
1 year ago
0
Docs test
#135
spisakt
closed
1 year ago
0
rpn-siganture error
#134
spisakt
closed
1 year ago
2
Add developer starting guide into the docs
#133
spisakt
opened
1 year ago
0
Merge docs
#132
mhmadAbs
closed
1 year ago
0
Test and Docs
#131
mhmadAbs
closed
1 year ago
0
Fix Dockerfile for RPN pipeline
#130
khoffschlag
closed
1 year ago
1
Lr maria
#129
mberjano
closed
1 year ago
0
Convert3D missing in Dockerfile
#128
khoffschlag
closed
1 year ago
1
requirement issue with pybids
#127
khoffschlag
closed
1 year ago
1
graphviz missing in Dockerfile
#126
khoffschlag
closed
1 year ago
2
nibabel missing in requirements.txt
#125
khoffschlag
closed
1 year ago
0
(Nearly) finalized rpn
#124
khoffschlag
closed
1 year ago
0
Integrate RPN preprocessing pipeline
#123
khoffschlag
closed
1 year ago
0
Let users easily fetch atlases
#122
khoffschlag
opened
1 year ago
1
Convert the in Python 2 pickled RPN weights to a python-independent format (e.g. csv)
#121
khoffschlag
closed
1 year ago
1
Create missing unittests
#120
khoffschlag
opened
1 year ago
1
Create GroupPipeline-Decorator
#119
khoffschlag
closed
1 year ago
0
RPN-Signiture Validation
#118
mhmadAbs
opened
1 year ago
0
change bet frac threshold in settings.ini
#117
khoffschlag
opened
1 year ago
0
106 docs
#116
mhmadAbs
closed
1 year ago
0
No sinking under specific circumstances
#115
khoffschlag
opened
1 year ago
0
allow (4D-)probmaps and lists in relabel_atlas method
#114
khoffschlag
opened
1 year ago
0
fix seaborn requirements issue
#113
khoffschlag
closed
1 year ago
0
seaborn missing in requirements.txt
#112
khoffschlag
closed
1 year ago
0
fix templateflow requirements issue
#111
khoffschlag
closed
1 year ago
0
104 carpet plot in qc
#110
mhmadAbs
closed
1 year ago
0
Compare results of PUMI with the RPN-Pipeline
#109
khoffschlag
opened
1 year ago
0
Add missing import statements inside carpet_plot method
#108
khoffschlag
closed
1 year ago
1
Move carpet_plots method from examples folder to a more suitable folder
#107
khoffschlag
closed
1 year ago
1
Docs
#106
mhmadAbs
closed
1 year ago
0
Integrate carpet plot into despinking
#105
mhmadAbs
closed
1 year ago
0
Add carpet plot to the dispiking pipeline
#104
mhmadAbs
opened
1 year ago
1
Ported func_proc_despike_afni and the tools and workflows required for it
#103
khoffschlag
closed
1 year ago
0
allow func-data in bet_hd
#102
khoffschlag
opened
1 year ago
0
create segmentation wf that automatically select the segmentation tool based on the configuration in settings.ini
#101
khoffschlag
closed
1 year ago
1
bbr qc part into seperate method
#100
khoffschlag
opened
1 year ago
0
- Carpet Plot implementation
#99
mhmadAbs
closed
1 year ago
1
port nuissremov_workflow
#98
khoffschlag
closed
1 year ago
1
port create_anat_noise_roi_workflow
#97
khoffschlag
closed
1 year ago
2
integrate mcflirt motion correction
#96
khoffschlag
closed
1 year ago
1
add seaborn to requirements
#95
khoffschlag
closed
1 year ago
0
wrong input_dir in example scripts
#94
khoffschlag
opened
1 year ago
0
discuss location of non-workflow methods
#93
khoffschlag
opened
1 year ago
0
requirements.txt problems with templateflow
#92
khoffschlag
closed
1 year ago
0
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