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pni-lab
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PUMI
PUMI: neuroimaging Pipelines Using Modular workflow Integration
https://pumi.readthedocs.io/en/latest/
GNU General Public License v3.0
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Use create_dataset_description instead of save_software_versions in the HCP pipelines
#191
khoffschlag
opened
3 months ago
0
Make datalad datasets usable as input datasets for cluster script
#190
khoffschlag
opened
3 months ago
0
Decrease slurm job deadline to 3 hours
#189
khoffschlag
closed
3 months ago
0
Fix problem with timeseries qc images (memory leaking)
#188
khoffschlag
closed
6 months ago
0
Improve cluster script & HCP pipeline
#187
khoffschlag
closed
6 months ago
0
Create dataset_description.json for derivatives
#186
khoffschlag
closed
6 months ago
0
Make 'software_versions.txt' more BIDS-compliant
#185
khoffschlag
closed
6 months ago
0
Fix critical bugs and integrate new features
#184
khoffschlag
closed
8 months ago
0
After the merge of "slurmify-pumi" branch, create new git tag
#183
khoffschlag
opened
9 months ago
1
Missing scripts in pyproject.toml
#182
khoffschlag
closed
8 months ago
0
versioneer is not able to fetch PUMI version
#181
khoffschlag
closed
8 months ago
0
Bug in add_argument statement for bbr (bbr will always be False)
#180
khoffschlag
closed
8 months ago
0
Check if the results of the fieldmap_correction workflow are correct
#179
khoffschlag
opened
9 months ago
0
Sink used PUMI version in derivatives
#178
khoffschlag
closed
8 months ago
1
Deepbet requirement missing in requirements.txt
#177
khoffschlag
closed
8 months ago
0
Adapt PUMI for newer python versions
#176
khoffschlag
closed
8 months ago
0
deepbet does not work in pumi docker container anymore
#175
khoffschlag
closed
8 months ago
0
Add apptainer script and HCP pipeline
#174
khoffschlag
closed
10 months ago
0
Fix func2standard
#173
khoffschlag
closed
10 months ago
0
Dockerfile_v0.6 - GLIBCXX_3.4.30 not found
#172
khoffschlag
closed
9 months ago
1
Create minified container based on Dockerfile_v0.6
#171
khoffschlag
opened
1 year ago
0
Can not build Dockerfile
#170
khoffschlag
closed
8 months ago
2
Integrate "deepbet" brain extraction tool
#169
khoffschlag
closed
9 months ago
0
Support brain extraction of functional images with HD-Bet
#168
khoffschlag
opened
1 year ago
0
Delete problem-causing file
#167
khoffschlag
closed
9 months ago
0
Update "Start developing PUMI on Windows" docs
#166
khoffschlag
opened
1 year ago
1
use func2standard
#165
khoffschlag
closed
10 months ago
1
fix rcpl pipeline for docker use
#164
khoffschlag
closed
1 year ago
0
Integrate RCPL model
#163
khoffschlag
closed
1 year ago
0
Sink unscrubbed FD
#162
khoffschlag
closed
1 year ago
0
integrate func2standard & fix bet qc images generation
#161
khoffschlag
closed
1 year ago
0
fix regex for GroupsPipeline
#160
khoffschlag
closed
1 year ago
0
Fix func2anat qc generation
#159
khoffschlag
closed
1 year ago
0
suffix specified when getting t1w images with BidsPipeline
#158
spisakt
closed
1 year ago
0
138 structural diffusion weighted imaging mrtrix3
#157
mhmadAbs
opened
1 year ago
0
BidsApp does not work with --help
#156
khoffschlag
closed
8 months ago
0
add tutorial on how to run PUMI pipeline in our docker container
#155
khoffschlag
closed
1 year ago
0
Merge test_atlas
#154
khoffschlag
closed
1 year ago
0
add MRtrix3 to Dockerfile
#153
khoffschlag
closed
1 year ago
0
get_ref_locally has no fallback value for 'ventricle_mask'
#152
khoffschlag
opened
1 year ago
0
update requirements.txt
#151
khoffschlag
closed
1 year ago
0
Create new Dockerfile that uses scikit-learn version 1.1.2
#150
khoffschlag
closed
1 year ago
0
Problems with the atlas_selection pipeline in combination with the MultiProc plugin
#149
khoffschlag
closed
1 year ago
0
"Permission denied" when running some pipelines with run_pumi_docker
#148
khoffschlag
closed
1 year ago
1
rpn_signature_timeseries_.py creates unwanted folders in the derivatives folder
#147
khoffschlag
closed
1 year ago
1
fix issue #145
#146
khoffschlag
closed
1 year ago
0
check if the output_dir and working_dir parameters are tackled well in the new BidsApp implementaqtion
#145
spisakt
closed
1 year ago
0
add runtime arguments to CLI - close #142
#144
khoffschlag
closed
1 year ago
0
compatibility fixes for FSL 6.0.1
#143
khoffschlag
closed
1 year ago
0
run_args cli parameter
#142
khoffschlag
closed
1 year ago
0
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