pnlbwh dMRIharmonization issues

pnlbwh / dMRIharmonization

Multi-site dMRI harmonization

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dipy v 1.1.1 not comaptible

#91 ShivyaGupta14 opened 2 months ago
0
image of mean FA is not appropriate

#90 ShivyaGupta14 opened 3 months ago
9
Version/Attribute Issue at Template Creation (n is not an attribute of QballModel)

#89 ShivyaGupta14 opened 3 months ago
6
Denoising Step

#88 jenna1029 opened 4 months ago
1
nibabel library: get_data() is deprecated, and we should start using get_fdata() instead.

#87 suheyla2 opened 6 months ago
0
Pipeline_test.sh values not matching expected

#86 jenna1029 closed 8 months ago
1
IIT atlas file links in README need update or causing ANTS and ITK ImageReader error

#85 Lanyavikins closed 1 year ago
0
Segmentation fault in lantsMultivariateTemplateConstruction2_fixed_random_seed.sh

#84 yoshito656 closed 2 years ago
0
Time estimate for template

#83 nancynewlin-masi closed 2 years ago
1
Compressed file ended before the end-of-stream marker was reached

#82 LucaGherardini closed 8 months ago
3
Support path names with dots

#81 tashrifbillah closed 2 years ago
1
Path with dots breaks `antsMultivariateTemplateConstruction2.sh`

#80 njhunsak closed 2 years ago
30
N_shm=-1 is not overwritten in config

#79 tashrifbillah opened 2 years ago
0
Conflicting starting meanFA values for each site depending on the direction of the harmonization.

#78 pall75 closed 8 months ago
16
Different data for template creation and harmonization, how to find the goodness of harmonization by observing the number after harmonization

#77 jwchen03 closed 8 months ago
4
Remove outdated comments

#76 tashrifbillah closed 3 years ago
0
Correct gfa() and apply transforms in two steps

#75 suheyla2 closed 3 years ago
6
Skipping unring step

#74 josephmje closed 3 years ago
2
Applying the harmonization to other diffusion weighted images

#73 JoaoPaulo100 closed 3 years ago
8
replace /tmp with gettempdir()

#72 tashrifbillah closed 3 years ago
2
b-values near 0 being remapped to `bNew`

#71 kcho closed 3 years ago
2
Harmonizing patients to healthy controls

#70 hughmt closed 3 years ago
1
processing data from reference site, which were not included in the template creation step

#69 kcho opened 3 years ago
2
Missing Scale_L4

#68 peterN908 closed 3 years ago
7
Update README.md

#67 kcho closed 4 years ago
0
pep8

#66 kcho closed 3 years ago
0
tests run N_shm key error

#65 vsiless closed 3 years ago
5
[Redundancy] Do not redo registration for harmonized data

#64 tashrifbillah opened 4 years ago
0
Use mkstemp to generate a named temporary file

#63 tashrifbillah opened 4 years ago
4
[redundancy] compute masked volume inside DIPY block

#62 tashrifbillah closed 4 years ago
1
harmonization of 1.5T and 3T scanners

#61 tashrifbillah closed 4 years ago
0
Harmonization for pediatric/neonatal datasets

#60 mblesac closed 4 years ago
1
Replacing SPM, FSL, REISERT tools with standard Python packages

#59 tashrifbillah opened 4 years ago
1
Challenge the program with --resample --debug --force

#58 tashrifbillah closed 4 years ago
1
add function for fitting shm on ref site

#57 tashrifbillah closed 4 years ago
0
data harmonization in TBI patients

#56 fedemoro closed 4 years ago
1
Fix force

#55 tashrifbillah closed 4 years ago
0
structuring outputs

#54 tashrifbillah closed 4 years ago
0
Replace `aramislab` by pnlbwh`

#53 tashrifbillah closed 4 years ago
1
setting smooth parameter for SH fitting to a smaller value

#52 suheyla2 closed 4 years ago
0
update xform only when it is non-zero

#51 tashrifbillah closed 4 years ago
0
Can --ref_name and --tar_name be not mandatory?

#50 tashrifbillah closed 4 years ago
1
Preserve singularity of qform() and sform() individually

#49 tashrifbillah closed 4 years ago
1
TODO: spherical harmonics model needs to be fitted on REF site w/o any scaling

#48 tashrifbillah closed 4 years ago
4
TODO: structure the output statistics file

#47 tashrifbillah closed 4 years ago
6
split path at .nii instead of just .

#46 tashrifbillah closed 4 years ago
1
Expected meanFAstats.txt from the pipeline_test.sh

#45 kcho closed 4 years ago
4
Data path parcellation

#44 suheyla2 closed 4 years ago
8
minor edits for tests

#43 kcho closed 4 years ago
1
os module is not imported in the `test_util.py` nor `fa_skeleton_test.py`

#42 kcho closed 4 years ago
1