poruloh Eagle issues - Githubissues

poruloh / Eagle

Haplotype phasing software

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issues

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Issue Compiling Eagle

#41 beneopp opened 7 months ago
1
Getting phase confidence for each SNP?

#40 EmiliaCXY opened 1 year ago
1
ERROR: --geneticMapFile must have four columns with names:

#39 haneenih7 opened 1 year ago
1
Phasing cell line vcfs

#38 aranham opened 1 year ago
2
Failed to allocate 18446744073709551596 bytes

#37 AkshajD opened 1 year ago
4
Eagle_v2.4.1 for ARM 64 architecture

#36 pshah-eng opened 2 years ago
2
commercial license for pharma company usage?

#35 Shicheng-Guo opened 2 years ago
0
Guide for compiling on Mac

#34 liviuspenter opened 2 years ago
0
ERROR: Failed to allocate 18446744073709551596 bytes

#33 shafayetrahat closed 1 year ago
3
Phase from pedigrees

#32 troyeeee opened 2 years ago
0
Reference dataset were not exited in the link

#31 panxiaoguang opened 2 years ago
0
Phasing SVs

#30 jjfarrell closed 3 years ago
1
Docker image

#29 BJWiley233 opened 3 years ago
1
allow compilation on systems that don't have SSE

#28 mr-c opened 3 years ago
0
HMM Beam Search Segfaults if no reference haplotypes are found

#27 hguturu opened 4 years ago
0
Segfault - tmpHaploBitsT not allocated when running LRP (Eagle --v1) on VCF file

#26 hguturu opened 4 years ago
0
Phasing with reference panel results into segmentation fault

#25 guosongwang closed 5 years ago
16
genotype likelihood input format

#24 sahwa opened 5 years ago
1
request: don't treat positions with missing IDs '.' as duplicates

#23 sahwa opened 5 years ago
1
Remove memcpy.o

#22 daheise closed 5 years ago
1
Build Issue: memcpy.o

#21 daheise closed 5 years ago
3
Parallel bgz

#20 daheise closed 5 years ago
2
Make htslib IO Parallel

#19 daheise closed 5 years ago
1
bgzip output instead of gzip?

#18 daheise closed 6 years ago
4
segmentation fault

#17 cadunesp closed 6 years ago
1
running eagle with hg38 aligned vcf

#16 jjfarrell closed 5 years ago
6
Question on feature change impact on performance and trio phasing

#15 hguturu closed 6 years ago
4
out of order SNPS

#14 flinz closed 5 years ago
1
don't impute missing sites when phasing without reference

#13 jessehoff closed 7 years ago
5
honour preexisting phase from pedigree or 10x Chromium

#12 mdkeehan opened 7 years ago
1
Prevent segfault when reporting sites polymorphic in only one of the …

#11 pd3 closed 7 years ago
0
Retain markers biallelic in the reference panel but monomorphic in the target sample

#10 pd3 closed 7 years ago
0
Fixing Segmentation fault in GenoData::initBed

#9 hguturu closed 7 years ago
1
Support haploid-only samples with --chrom X

#8 pd3 closed 7 years ago
0
Map required

#7 jessehoff closed 7 years ago
0
Fix bug in chrX reading

#6 pd3 closed 7 years ago
0
Imputation of missing markers

#5 shubhamsaini opened 7 years ago
1
Monomorphic SNPs in target are misreported

#4 UnkindPartition closed 7 years ago
1
Multi-allelic/monomorphic SNPs in ref are misreported

#3 UnkindPartition closed 7 years ago
3
Treat a single "." as a valid diploid missing genotype.

#2 pd3 closed 8 years ago
0
Avoid streaming the whole VCF when only a region is requested

#1 pd3 closed 8 years ago
0