qiime2 q2-vsearch issues

qiime2 / q2-vsearch

vsearch plugin for QIIME 2

BSD 3-Clause "New" or "Revised" License

6 stars 20 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

IMP: adds usage example for `cluster-features-de-novo`

#101 hagenjp closed 1 month ago
0
Add uchime2_denovo to close #92

#100 colinbrislawn opened 1 month ago
4
MAINT: updates for python 3.10

#99 lizgehret closed 1 month ago
0
Expose `fastq_join` command to concatenate (not merge) PE reads

#98 colinbrislawn opened 3 months ago
4
BUG: passing one or more filtering parameters to `dereplicate-sequences` results in error

#97 colinvwood opened 6 months ago
1
MAINT: add threads/jobs primitives

#96 colinvwood closed 8 months ago
0
allow vsearch merge-pairs to output unmerged reads

#95 colinvwood closed 11 months ago
8
CI:Updates to ci-dev workflow

#94 hagenjp closed 1 year ago
0
Expose `FeatureMap` data when clustering

#93 wasade opened 1 year ago
2
ENH: add support for the different versions of `uchime_denovo` within vsearch

#92 mikerobeson opened 1 year ago
2
CI: add additional tests in commands section

#91 colinvwood closed 1 year ago
0
NEW: Exposes `strand` parameter for `cluster_features_de_novo` (#90)

#90 vaamb closed 1 year ago
3
ci: force re-render again

#89 lizgehret closed 1 year ago
0
ci: force re-render for skbio update

#88 lizgehret closed 1 year ago
0
maint: rename `join-pairs` to `merge-pairs`

#87 colinbrislawn closed 2 years ago
1
imp: adds more options to `dereplicate_sequences()`

#86 colinbrislawn closed 2 years ago
7
dep: pandas >=1.2.5, biom 2.1.12, skbio 0.5.7

#85 thermokarst closed 2 years ago
0
Rename `join-pairs` to `merge-pairs`

#84 mikerobeson closed 2 years ago
7
dep: unpin vsearch

#83 thermokarst closed 2 years ago
0
dep: pin skbio, pandas, and biom

#82 thermokarst closed 2 years ago
0
ci: update recipe

#81 thermokarst closed 3 years ago
0
ci: library integration

#80 thermokarst closed 3 years ago
0
MAINT: conda recipe updates to include 'about' and 'test' keys

#79 lizgehret closed 3 years ago
0
maint: drop monkeypatch parse_uc

#78 thermokarst closed 3 years ago
1
new: python 3.8

#77 thermokarst closed 3 years ago
0
squash

#76 thermokarst closed 3 years ago
0
Please support vsearch 2.13 or newer (Debian Packaging)

#75 shayandoust closed 1 year ago
3
IMP: Remove sample ids from derep seqs sequences

#74 Oddant1 closed 3 years ago
1
NEW: Add fasta_width 0 to vsearch methods

#73 Oddant1 closed 4 years ago
0
MAINT: Add --minseqlength 1

#72 Oddant1 closed 4 years ago
6
IMP: merge fastq_stats_* visualizers into a single action

#71 angrybee closed 4 years ago
3
merge fastq_stats_* visualizers into a single action

#70 nbokulich closed 4 years ago
1
Missing a length filter cross-reference in `cluster-features-*` actions

#69 thermokarst closed 4 years ago
3
derep - expose minseqlength parameter

#68 thermokarst closed 2 years ago
0
PERF: closed-ref SQL improvements

#67 thermokarst closed 4 years ago
7
vsearch cluster-features-de-novo fatal error

#65 stan-iakhno closed 5 years ago
1
add --fasta_width 0 to close #48

#64 colinbrislawn closed 2 years ago
20
ENH: Expose --threads for join_pairs, closes #43

#63 colinbrislawn closed 5 years ago
3
Stats

#62 angrybee closed 4 years ago
4
MAINT: Travis, bump to python 3.6

#60 thermokarst closed 5 years ago
0
MAINT: Updates for python 3.6

#59 thermokarst closed 5 years ago
0
BUG: derep-seqs produces mismatched feature IDs

#57 thermokarst closed 1 year ago
4
Update for flake8 v3.6

#56 ChrisKeefe closed 6 years ago
0
ENH: `dereplicate-sequences` expose parameter to disable sequence hash IDs

#55 nbokulich opened 6 years ago
8
ENH: adds --derep_prefix dereplication parameter

#54 colinbrislawn closed 6 years ago
4
MAINT: Pin vsearch at 2.7.0

#53 thermokarst closed 6 years ago
0
ENH: output closed-ref OTU picking stats

#52 nbokulich opened 6 years ago
2
spellcheck plugin_setup.py

#51 colinbrislawn closed 6 years ago
0