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richelbilderbeek
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raket
What is the error we make, when nature has protracted speciation, and inference ignore this?
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Simplify PBD taxon names
#48
richelbilderbeek
opened
4 years ago
0
Add 'update_raket'
#47
richelbilderbeek
opened
5 years ago
0
Add 'collect_pbd_params'
#46
richelbilderbeek
opened
5 years ago
0
Test parameter set should be short
#45
richelbilderbeek
closed
5 years ago
1
Create sampling parameters set
#44
richelbilderbeek
opened
5 years ago
0
Check for Peregrine friendly filenames
#43
richelbilderbeek
closed
5 years ago
2
Create parameters that create their files in the right folder
#42
richelbilderbeek
closed
5 years ago
0
Create test parameter set input files
#41
richelbilderbeek
closed
5 years ago
0
Create general parameter set input files
#40
richelbilderbeek
opened
5 years ago
0
Create general parameter set
#39
richelbilderbeek
opened
5 years ago
0
Put files in the right folders
#38
richelbilderbeek
closed
5 years ago
2
Be sure about number of mutations in twin alignment
#37
richelbilderbeek
closed
5 years ago
1
No NA's in est_evidences table
#36
richelbilderbeek
closed
5 years ago
1
system call failed: Cannot allocate memory
#35
richelbilderbeek
opened
5 years ago
0
Safeguard against CBS
#34
richelbilderbeek
closed
5 years ago
1
Set crown age
#33
richelbilderbeek
closed
5 years ago
1
Create general parameter set file with razzo file setup
#31
richelbilderbeek
closed
5 years ago
1
Call pirouette from raket
#32
richelbilderbeek
closed
5 years ago
2
2_create_input_files_sampling
#30
richelbilderbeek
closed
5 years ago
3
6_to_long
#29
richelbilderbeek
closed
5 years ago
1
10_create_fig_1
#28
richelbilderbeek
opened
5 years ago
2
4_create_nltt_files
#27
richelbilderbeek
closed
5 years ago
1
3_create_posterior_files
#26
richelbilderbeek
closed
5 years ago
2
2_create_input_files_general
#25
richelbilderbeek
closed
5 years ago
1
Remove rkt_ prefix
#24
richelbilderbeek
closed
5 years ago
1
mcbette: calculate weight for models
#23
richelbilderbeek
closed
5 years ago
1
Problems installing Rtools on R 3.5.0 on Windows 7
#22
richelbilderbeek
closed
6 years ago
6
Clock model and site model usage
#21
richelbilderbeek
closed
6 years ago
1
Are sequential seeds correlated?
#20
richelbilderbeek
closed
6 years ago
1
It takes too long to create the full sampling data set
#19
richelbilderbeek
closed
6 years ago
2
Each parameter set must have an equal amount of elements
#18
richelbilderbeek
closed
6 years ago
0
Create CODE_OF_CONDUCT.md
#17
richelbilderbeek
closed
6 years ago
0
Fix test
#16
richelbilderbeek
closed
6 years ago
3
Fix build error
#15
richelbilderbeek
closed
6 years ago
11
Fixed broken tests
#14
J-Damhuis
closed
6 years ago
1
Improve and test pbd_expected_n_extant
#13
richelbilderbeek
closed
6 years ago
1
For which parameter settings are less than 1000 taxons expected?
#12
richelbilderbeek
closed
6 years ago
3
Prerequisite: phangorn::simSeq is correct
#11
richelbilderbeek
closed
6 years ago
1
Prerequisite: after discarding a burn-in of 10%, 1000 values must remain
#10
richelbilderbeek
closed
6 years ago
1
Prerequisite: can create such a big data frame
#9
richelbilderbeek
closed
6 years ago
3
Prerequisite: consistent sampling
#8
richelbilderbeek
closed
6 years ago
3
Prerequisite: babette provides for constant known strict clock rate
#7
richelbilderbeek
closed
6 years ago
1
Prerequisite: data frame in long form plottable as violin plot
#6
richelbilderbeek
closed
6 years ago
2
Prerequisite: data frame can be converted to long form
#5
richelbilderbeek
closed
6 years ago
0
Prerequisite: PBD with Inf as speciation completion rate
#4
richelbilderbeek
closed
6 years ago
2
Exceeded step memory limit
#3
richelbilderbeek
closed
6 years ago
5
Peregrine issue: file.exists(beast_log_filename) is not TRUE
#2
richelbilderbeek
closed
6 years ago
1
Peregrine issue: cannot remove file 'beast2.xml'
#1
richelbilderbeek
closed
6 years ago
3