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roblanf
/
sangeranalyseR
functions to analyse sanger sequencing reads in R
MIT License
95
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24
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SCF compatibility
#95
PedroDaPos
opened
6 months ago
0
Minimal overlapping F and R 16s reads
#94
jvkuehl
opened
7 months ago
0
batch SangerRead instance generation from AB1
#93
christyhandel
opened
7 months ago
0
Forward reads only
#92
Nicfall
opened
9 months ago
1
M2trimming: error when handling low quality file
#91
ryamy
opened
1 year ago
0
SangerContig: support for non-coding references
#90
nick-youngblut
opened
1 year ago
1
Error in writeXStringSet
#89
nick-youngblut
opened
1 year ago
0
Align and trim forward reads only?
#88
hbrappaport
closed
1 year ago
0
Majority rules consensus base calling?
#87
nick-youngblut
opened
1 year ago
1
writeFasta: `outputDir=NULL` write to temp directory
#86
nick-youngblut
opened
1 year ago
0
Issues with Reproducible tutorial
#85
jspychalla
opened
1 year ago
2
variant calling from reference gene
#84
wimmulders-ITM
opened
1 year ago
0
color in chromatogram
#83
Andreas-Bio
closed
1 year ago
1
Error in TreeLine
#82
anugos
opened
2 years ago
2
generateReport exits with error 99
#81
marthaluka
closed
2 years ago
1
Failure to generate html report
#80
somakchowdhury
closed
2 years ago
13
Regarding sangeranalyseR package
#79
Ruddhida
closed
2 years ago
2
Alignment only forward reads
#78
ryamy
closed
2 years ago
3
Launch shiny on bioconductor docker image
#77
ryamy
closed
2 years ago
1
qualityPhredScores Error
#76
cgcole
opened
2 years ago
0
Use of functions not inside interactive environment
#75
padpadpadpad
opened
2 years ago
1
ISSUE SangeranalyseR Shiny app/ launchApp command does not work
#74
MarieRut
opened
2 years ago
1
Change documentation for function args?
#73
odcambc
closed
2 years ago
1
"subscript out of bounds"
#72
dmaher14
opened
2 years ago
6
base calling
#71
ramiroricardo
opened
3 years ago
1
launchApp(my_aligned_contigs) issue, please help
#70
Vladislav-Shevtsov
closed
3 years ago
2
The function“SangerRead” Error
#69
wanjinhu
closed
2 years ago
4
Unavailable external font resource
#68
pbpearman
opened
3 years ago
2
Error to align Sanger file
#67
varelaes
closed
3 years ago
1
improper merge/contig
#66
tomsauv
opened
3 years ago
5
Handle the case where a read is assigned to >1 place
#65
roblanf
opened
3 years ago
0
Is there a version in R 3.6 that I can install?
#64
lixiaopi1985
closed
3 years ago
1
writeFasta problem
#63
phkrogh
closed
3 years ago
2
Obtain odd consensus sequence when aligning piecewise DNA segments
#62
bomsterr
closed
3 years ago
7
Launch Shiny app error
#61
Kuanhao-Chao
opened
3 years ago
16
Error when launching Shiny app in package sangeranalyseR
#60
Kuanhao-Chao
opened
3 years ago
14
Can sangeranalyseR provides the function of identifying the quality of chromatogram (ab1 file)?
#59
wanjinhu
closed
3 years ago
3
Manual colour selection for colourblind users
#58
lesserof2weevils
closed
3 years ago
1
generateReport failing to open pdf
#57
camilogarciabotero
closed
3 years ago
5
Interactive plot does not show in final report
#56
Kuanhao-Chao
closed
3 years ago
1
SangerAlignment Error enhancement
#55
Kuanhao-Chao
opened
3 years ago
0
Cannot launch shiny App
#54
UndressK
closed
3 years ago
3
Error in vapply(object@contigList, function(contig) { : values must be length 1, but FUN(X[[1]]) result is length 2There were 33 warnings (use warnings() to see them)
#53
gabriellovate
closed
3 years ago
17
SangerAlignment error
#52
wbooker
closed
3 years ago
5
Improve parameter descriptions in docs
#51
roblanf
closed
4 years ago
1
Output regex matching table to user as part of logging
#50
roblanf
opened
4 years ago
0
Add documentation "How to ..." section
#49
Kuanhao-Chao
opened
4 years ago
0
consider phred scores when consensus building
#48
roblanf
opened
4 years ago
2
Error loading ab1 data
#47
DeepakVeerappan
closed
4 years ago
9
reverse sequence chromatograms + some questions
#46
ewysocka
closed
4 years ago
2
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