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ropensci
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rentrez
talk with NCBI entrez using R
https://docs.ropensci.org/rentrez
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Random sample of large set of search results
#194
hlappen
opened
1 month ago
1
Using web history instead of ids returns more results than expected
#193
stitam
opened
7 months ago
5
Download parts of a large sequence
#192
valkm2
opened
8 months ago
0
Order of the ids in entrez_search sorted in a different way than web search
#191
AdeFouchier
closed
1 year ago
1
how to get 'note graph' from FEATURES by `entrez_summary`
#190
trilisser
opened
1 year ago
0
Institution/organization info via rentrez
#189
trilisser
opened
1 year ago
4
entrez_link returns inconsistent results
#188
xinf2
opened
1 year ago
1
Error in ans[[1]] : subscript out of bounds
#187
drumstick90
opened
1 year ago
3
multiple check_xml_errors when using entrez_link of protien IDs of Metagenomic assembled genomes from NCBI
#186
TJrogers86
opened
1 year ago
2
Search and fetch are providing the wrong data?
#185
maryemmaj
opened
1 year ago
3
entrez_link sometimes doesn't return "$nuccore_pubmed"
#184
niki0211
closed
1 year ago
5
How to output metadata of interest?
#183
michael-mazzucco
closed
1 year ago
3
How to download large Clinvar tabular table
#182
manburst
opened
2 years ago
2
how to get protein feature information
#181
tangwei1129
opened
2 years ago
3
Get PubMed metadata from large amount of articles
#180
LauraVP1994
opened
2 years ago
3
Making entrez_fetch output accessible in R
#179
ellalalalalalala
opened
2 years ago
3
Web history object - No esummary records found in file
#178
d-caraballo
opened
2 years ago
6
entrez_summary does not retrieve all the record
#177
tdyoshida
closed
2 years ago
3
getting all text data from pubmed articles
#176
Hilal-Urun
closed
2 years ago
4
Inconsistent behaviour and unnecessary warning when entrez_link called with single ID and by_id = TRUE
#175
johnomics
opened
2 years ago
1
FIX: entrez_post does not use POST method for >200 IDs
#174
allenbaron
opened
2 years ago
0
entrez_post and fetch do not return the same results
#173
JonathonMifsud
opened
3 years ago
0
`entrez_fetch` returns multiple records from the `nuccore` database when given one ID
#172
ajrominger
opened
3 years ago
2
How to specify genome assembly
#171
NavXav
opened
3 years ago
0
`parse_pubmed_xml` erases sections/header labels in PMC abstracts
#170
gwern
opened
3 years ago
2
Subname searchers
#169
peterscott1980
opened
3 years ago
0
HTTP failure 414, the request is too large for entrez_fetch
#168
thdiakon
opened
3 years ago
0
Feature Request: Boolean composition operators for esearch with web_history objects
#167
billdenney
opened
3 years ago
0
Feature Request: use_history in entrez_search becomes web_history
#166
billdenney
opened
3 years ago
0
Minor code cleanups
#165
billdenney
opened
3 years ago
1
make entrez_search() use POST (and some minor typo fixes)
#164
billdenney
opened
3 years ago
0
HTTP failure 414 (the request is too large) even with entrez_search(use_history = TRUE)
#163
SchmidtPaul
opened
3 years ago
9
HTTP failure: 500
#162
SuzeMa
opened
3 years ago
2
API rate limiting for concurrent processes
#161
epruesse
opened
3 years ago
1
Discrepancy between number of sequences retrieved via web_history and number of sequence IDs
#160
mbarkdull
closed
3 years ago
2
Suggest: full URL in error message
#159
richelbilderbeek
opened
3 years ago
1
Suggest: more helpful error message for entrez_search with high retmax value
#158
richelbilderbeek
opened
3 years ago
4
Improve error message when using a nonsense database
#157
richelbilderbeek
opened
3 years ago
2
API rate limit exceeded
#156
DannyArends
closed
3 years ago
1
How to use efetch with the new query format?
#155
anleopa
closed
3 years ago
5
Acessing Biosample Attributes
#154
fconstancias
closed
3 years ago
1
Bug fix: entrez_search doesn't run for rettype = "count"
#153
maia-sh
opened
4 years ago
1
entrez_link: Error in res[[1]] : subscript out of bound
#152
SuzeMa
closed
3 years ago
2
how to get more than 100 entries when using entrez_search
#151
HediaTnani
closed
3 years ago
1
Discrepancy between Pubmed Search results and entrez_search()
#150
rachitest
closed
4 years ago
3
How to get the GEO update list?
#149
cgh2797
closed
3 years ago
1
PUBMED scraping MeSh associated terms
#148
SalvatoreRa
closed
3 years ago
1
refseq select id from ENSEMBL id
#147
cb4github
closed
3 years ago
1
Error: Must specify either (not both) 'id' or 'web_history' arguments
#146
arteteco
closed
3 years ago
4
web_history and big queries
#145
haruosuz
opened
4 years ago
0
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