ropensci rentrez issues

ropensci / rentrez

talk with NCBI entrez using R

https://docs.ropensci.org/rentrez

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issues

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Random sample of large set of search results

#194 hlappen opened 1 month ago
1
Using web history instead of ids returns more results than expected

#193 stitam opened 7 months ago
5
Download parts of a large sequence

#192 valkm2 opened 8 months ago
0
Order of the ids in entrez_search sorted in a different way than web search

#191 AdeFouchier closed 1 year ago
1
how to get 'note graph' from FEATURES by `entrez_summary`

#190 trilisser opened 1 year ago
0
Institution/organization info via rentrez

#189 trilisser opened 1 year ago
4
entrez_link returns inconsistent results

#188 xinf2 opened 1 year ago
1
Error in ans[[1]] : subscript out of bounds

#187 drumstick90 opened 1 year ago
3
multiple check_xml_errors when using entrez_link of protien IDs of Metagenomic assembled genomes from NCBI

#186 TJrogers86 opened 1 year ago
2
Search and fetch are providing the wrong data?

#185 maryemmaj opened 1 year ago
3
entrez_link sometimes doesn't return "$nuccore_pubmed"

#184 niki0211 closed 1 year ago
5
How to output metadata of interest?

#183 michael-mazzucco closed 1 year ago
3
How to download large Clinvar tabular table

#182 manburst opened 2 years ago
2
how to get protein feature information

#181 tangwei1129 opened 2 years ago
3
Get PubMed metadata from large amount of articles

#180 LauraVP1994 opened 2 years ago
3
Making entrez_fetch output accessible in R

#179 ellalalalalalala opened 2 years ago
3
Web history object - No esummary records found in file

#178 d-caraballo opened 2 years ago
6
entrez_summary does not retrieve all the record

#177 tdyoshida closed 2 years ago
3
getting all text data from pubmed articles

#176 Hilal-Urun closed 2 years ago
4
Inconsistent behaviour and unnecessary warning when entrez_link called with single ID and by_id = TRUE

#175 johnomics opened 2 years ago
1
FIX: entrez_post does not use POST method for >200 IDs

#174 allenbaron opened 2 years ago
0
entrez_post and fetch do not return the same results

#173 JonathonMifsud opened 3 years ago
0
`entrez_fetch` returns multiple records from the `nuccore` database when given one ID

#172 ajrominger opened 3 years ago
2
How to specify genome assembly

#171 NavXav opened 3 years ago
0
`parse_pubmed_xml` erases sections/header labels in PMC abstracts

#170 gwern opened 3 years ago
2
Subname searchers

#169 peterscott1980 opened 3 years ago
0
HTTP failure 414, the request is too large for entrez_fetch

#168 thdiakon opened 3 years ago
0
Feature Request: Boolean composition operators for esearch with web_history objects

#167 billdenney opened 3 years ago
0
Feature Request: use_history in entrez_search becomes web_history

#166 billdenney opened 3 years ago
0
Minor code cleanups

#165 billdenney opened 3 years ago
1
make entrez_search() use POST (and some minor typo fixes)

#164 billdenney opened 3 years ago
0
HTTP failure 414 (the request is too large) even with entrez_search(use_history = TRUE)

#163 SchmidtPaul opened 3 years ago
9
HTTP failure: 500

#162 SuzeMa opened 3 years ago
2
API rate limiting for concurrent processes

#161 epruesse opened 3 years ago
1
Discrepancy between number of sequences retrieved via web_history and number of sequence IDs

#160 mbarkdull closed 3 years ago
2
Suggest: full URL in error message

#159 richelbilderbeek opened 3 years ago
1
Suggest: more helpful error message for entrez_search with high retmax value

#158 richelbilderbeek opened 3 years ago
4
Improve error message when using a nonsense database

#157 richelbilderbeek opened 3 years ago
2
API rate limit exceeded

#156 DannyArends closed 3 years ago
1
How to use efetch with the new query format?

#155 anleopa closed 3 years ago
5
Acessing Biosample Attributes

#154 fconstancias closed 3 years ago
1
Bug fix: entrez_search doesn't run for rettype = "count"

#153 maia-sh opened 4 years ago
1
entrez_link: Error in res[[1]] : subscript out of bound

#152 SuzeMa closed 3 years ago
2
how to get more than 100 entries when using entrez_search

#151 HediaTnani closed 3 years ago
1
Discrepancy between Pubmed Search results and entrez_search()

#150 rachitest closed 4 years ago
3
How to get the GEO update list?

#149 cgh2797 closed 3 years ago
1
PUBMED scraping MeSh associated terms

#148 SalvatoreRa closed 3 years ago
1
refseq select id from ENSEMBL id

#147 cb4github closed 3 years ago
1
Error: Must specify either (not both) 'id' or 'web_history' arguments

#146 arteteco closed 3 years ago
4
web_history and big queries

#145 haruosuz opened 4 years ago
0