ropensci rentrez issues

ropensci / rentrez

talk with NCBI entrez using R

https://docs.ropensci.org/rentrez

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issues

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Subsampling search results

#144 alexpiper opened 4 years ago
1
Pull authors’ full names

#143 peclayson closed 4 years ago
3
Amount of data accessible with this pkg?

#142 sckott closed 4 years ago
2
Getting gene id from taxon name

#141 sharifX closed 3 years ago
2
Error when fetching large number of XML files

#140 kevinchen27 opened 4 years ago
0
Downloading large data sets

#139 kevinchen27 opened 5 years ago
1
Rename CONDUCT.md to CODE_OF_CONDUCT.md

#138 Bisaloo opened 5 years ago
0
Fix sleep_time causing API rate limit exceeded

#137 ttdtrang opened 5 years ago
0
Robust way to return DOI for a given Pubmed ID?

#136 iainmwallace opened 5 years ago
4
how to show pubmed IDs per year

#135 ghost closed 3 years ago
1
extract MeSH terms and Author Key Words from a PubMed record

#134 sbalci closed 5 years ago
2
Error in ans[[1]] : subscript out of bounds

#133 anleopa closed 3 years ago
3
HTTP failure: 429

#132 anusurendra closed 5 years ago
5
Multiple PMIDs

#131 agbarnett closed 5 years ago
1
use with a local copy of PubMed

#130 sbalci closed 5 years ago
3
Fix typo in README

#129 karawoo closed 5 years ago
1
Fix md headers in vignette

#128 Bisaloo closed 5 years ago
1
Consider forcing HTTP/1.1 until Entrez upgrades their Nginx install

#127 hammer closed 5 years ago
3
update docs for extract_from_esummary

#126 dwinter closed 5 years ago
0
Feature Request: Enable an update method for entrez_search

#125 billdenney opened 6 years ago
1
entrez_link by_id = TRUE with web_history

#124 willgearty opened 6 years ago
2
entrez_link randomly doesn't return links

#123 willgearty closed 6 years ago
6
Entrez_fetch download sequences with variable start-stop lengths

#122 PWSmit closed 6 years ago
2
fix bug where retmode is not passed down to make_entrez_query in entr…

#121 gmbecker closed 6 years ago
7
Plus signs in queries

#120 arendsee closed 6 years ago
1
Blog post for paper acceptance and use of API keys

#119 dwinter closed 6 years ago
0
Add ORCID ids for authors that have them

#118 dwinter closed 6 years ago
3
Work out how to handle changes to rate limiting

#117 dwinter closed 6 years ago
7
Include API key set by `ENTREZ_KEY` in calls to NCBI

#116 dwinter closed 6 years ago
0
Document ENTREZ_KEY environmental variable

#115 dwinter closed 6 years ago
0
Meta: handle API keys

#114 dwinter closed 6 years ago
1
functions to clearly parse Nucleotide database efetch?

#113 arw36 closed 6 years ago
4
A manuscript

#112 dwinter closed 6 years ago
0
inconsistency with search result count numbers

#111 timedreamer closed 6 years ago
2
Lifespan of web_history object

#110 pschloss closed 6 years ago
2
Error in vapply(elements, encode, character(1))

#109 ghost closed 7 years ago
8
Throw error if identifier sending function is given empty identifiers

#108 dwinter closed 7 years ago
0
How to keep Protein ID when retrieving coding sequences

#107 santiagoha closed 7 years ago
8
`entrez_summary()` fails silently at > 500 results

#106 npjc closed 7 years ago
5
Unexpected behaviour with entrez_summary() version default setting

#105 rossmounce closed 7 years ago
5
How can I return the number of nucleotide base pairs across many records?

#104 rossmounce closed 7 years ago
4
Catch `error` fields in esummary json files

#103 dwinter closed 7 years ago
0
Seaching pubmed by secondary id [SI]

#102 chackoge closed 7 years ago
7
Document how to find available formats for entrez_fetch

#101 dwinter closed 7 years ago
0
Get abstract of a given PMID

#100 vojtechhuser closed 7 years ago
2
change travis file to cache: packages and sudo: false to speed up builds

#99 sckott closed 7 years ago
2
Unable to parse multiple affiliations by author and pmid using entrez_fetch

#98 santoshmungle closed 7 years ago
5
Unable to use entrez_post and web_history to get large amounts of data

#97 xhan85 closed 7 years ago
5
Document using web search to discover options for Filter in `entrez_search`

#96 dwinter closed 7 years ago
0
entrez_search returning "DISCONTINUED" genes

#95 bastiensadoul closed 7 years ago
1

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