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ropensci
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rentrez
talk with NCBI entrez using R
https://docs.ropensci.org/rentrez
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question about querying a sequence
#94
yukund
closed
7 years ago
2
put NEWS bits in releases
#93
sckott
closed
7 years ago
1
entrez_fetch ignoring retmax
#92
boopsboops
closed
7 years ago
2
entrez_fetch does not return XML when querying protein database
#91
grepinsight
closed
7 years ago
1
issue with `id_or_webenv()`?
#90
fmichonneau
closed
7 years ago
1
Allow the use of POST
#89
reedacartwright
closed
7 years ago
9
NCBI "phasing out" GIs
#88
dwinter
closed
7 years ago
0
Timeout was reached
#87
tobigithub
closed
8 years ago
4
NCBI going https only
#86
dwinter
closed
8 years ago
0
Describe server-side errors in vignette
#85
dwinter
closed
7 years ago
0
Error in ans[[1]] : subscript out of bounds
#84
Andreas-Bio
closed
7 years ago
3
Document XML dumps in summary records
#83
dwinter
closed
7 years ago
1
entrez_summary doesn't like nested XML in JSON or XML(sampledata)
#82
tomck
closed
7 years ago
2
Put urls to github and issues in desc file?
#81
sckott
closed
8 years ago
0
Specify encoding is UTF-8 when parsing returns with httr
#80
dwinter
closed
8 years ago
0
explicitly print for tests of print statements
#79
dwinter
closed
8 years ago
0
Fix byg iu `by_id` mode detected in latest httr
#78
dwinter
closed
8 years ago
0
OMIM no longer links to SNP?
#77
dwinter
closed
8 years ago
1
Deal with invald IDs in entrez_link "by_id" mode
#76
dwinter
closed
8 years ago
0
Document errors with large requests
#75
dwinter
closed
8 years ago
0
entrez_summary(), entrez_fetch() parse errors
#74
gadepallivs
closed
7 years ago
19
Allow entrez_fetch to parse `uilist` records
#73
dwinter
closed
8 years ago
0
Allow entrez_fetch to parse XML files for which retype != "xml"
#72
dwinter
closed
8 years ago
0
Travis errors when the vignette
#71
dwinter
closed
8 years ago
2
Problems parsing large downloads
#70
pschloss
closed
8 years ago
3
entrez_search
#69
FranzKrah
closed
8 years ago
2
DOI number?
#68
pschloss
closed
8 years ago
8
entrez_summary() unable to retrieve references/ refsource for certain PMIDs
#67
gadepallivs
closed
8 years ago
18
readme trendy topics code revision
#66
htc502
closed
8 years ago
1
extract_form_esummary matrix cannot be cleanly written to csv
#65
gadepallivs
closed
8 years ago
5
extract_form_esummary should work on a single esummary
#64
dwinter
closed
8 years ago
0
Error in as.vector(x, "character") : cannot coerce type 'externalptr' to vector of type 'character'
#63
gadepallivs
closed
8 years ago
14
Updated rentrez package today and having issues with run
#62
gadepallivs
closed
8 years ago
2
entrez_global_query
#61
gadepallivs
closed
8 years ago
1
Query building in R
#60
dwinter
opened
8 years ago
10
entrez_search error
#59
FrVan
closed
8 years ago
2
new_vignette web history usage example
#58
htc502
closed
8 years ago
3
elink test failing
#57
dwinter
closed
8 years ago
0
Cleanly extract urls from links
#56
dwinter
closed
8 years ago
0
entrez_search usage
#55
gadepallivs
closed
8 years ago
11
typo check of new_vignette branch
#54
htc502
closed
8 years ago
2
Skip tests on CRAN
#53
dwinter
closed
8 years ago
0
web history object
#52
dwinter
closed
9 years ago
1
Support "by Id" for `entrez_link`
#51
momeara
closed
9 years ago
4
Cleaner check that either `ID` or `WebEnv` (but not both) set
#50
dwinter
closed
9 years ago
0
@imporFrom to use XML, jsonlite
#49
dwinter
closed
9 years ago
1
Handle API args better
#48
dwinter
closed
9 years ago
1
elink usage example:entrezID->transcript sequence
#47
htc502
closed
9 years ago
3
Helpful error message for over-long requests
#46
dwinter
closed
9 years ago
1
Error in make_entrez_query() client error: (414) Request-URI Too Long
#45
akshaynagpal
closed
9 years ago
5
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