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royerlab
/
ultrack
Cell tracking and segmentation software
https://royerlab.github.io/ultrack
BSD 3-Clause "New" or "Revised" License
64
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7
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Add `sigma_t` to `labels_to_contours`
#117
JoOkuma
opened
1 day ago
0
Including Jacky's SLURM example/docs
#116
JoOkuma
closed
2 days ago
2
Bump the github-actions group with 6 updates
#115
dependabot[bot]
closed
3 days ago
0
Adding python 3.12 support
#114
JoOkuma
opened
1 week ago
3
Updating cellpose args documentation and fixing cellpose import
#113
JoOkuma
opened
1 week ago
0
Docs improvements
#112
JoOkuma
closed
3 days ago
0
Remove `split_tracks_df_by_lineage` and replace with it with `split_trees`
#111
JoOkuma
opened
1 week ago
0
Add a Dependabot config to auto-update GitHub action versions
#110
kurtmckee
closed
1 week ago
1
`tracks_df_movement` not working 2D data, `["y", "x"]`
#109
JoOkuma
opened
2 weeks ago
0
Loading CellPose
#108
TeunHuijben
opened
3 weeks ago
0
Python 3.12
#107
TeunHuijben
closed
3 weeks ago
0
Unpin `ome-zarr` dependency and use `iohub` for ultrack API
#106
JoOkuma
opened
4 weeks ago
0
ImportError and NameError in multi_color_ensemble notebook
#105
raeesahhayatudin
opened
4 weeks ago
1
Fixed `labels_to_edges` typo
#104
alex-1001
closed
4 weeks ago
3
replacing PyTorch Cuda with tensor flow for MacOS
#103
MugdhaSathe
opened
1 month ago
1
Refactoring `detection` to `foreground`
#102
JoOkuma
closed
1 month ago
3
Fixing when segm painter in none in filter short tracks
#101
JoOkuma
closed
1 month ago
0
Improve error message when adding nodes to existing database
#100
JoOkuma
opened
1 month ago
0
Fix tracks video wrong zoom bug
#99
JoOkuma
closed
1 month ago
0
Adding gap closing auxiliary function
#98
JoOkuma
closed
1 month ago
0
Added warning when fewer tracks available than requested in track videos
#97
JoOkuma
closed
2 months ago
0
Cell splitting when passing in single candidate segmentation
#96
gouthamr321
closed
2 months ago
2
tracking parameters related to the weighting of the raw intensity values
#95
gouthamr321
closed
3 months ago
3
Missing status update to `Tracker.track`
#94
JoOkuma
closed
3 months ago
1
Added missing napari.yaml on setup.cfg
#93
JoOkuma
closed
3 months ago
1
updating python versions on CI
#92
JoOkuma
opened
4 months ago
1
Stay with same cell
#91
tischi
opened
4 months ago
2
Bug fix and improvement in TrackMate export
#90
qin-yu
closed
4 months ago
2
plantseg boundaries
#89
tischi
opened
4 months ago
3
Skip CuPy v13.0.* due to broken `ElementwiseKernel` and other core kernels
#88
qin-yu
closed
4 months ago
2
Added throttling to segment database insertion
#87
JoOkuma
closed
4 months ago
3
weights question
#86
tischi
opened
4 months ago
3
Improve installation guide and env files for Napari/Qt and PlantSeg
#85
qin-yu
closed
4 months ago
2
Improve napari installation instructions?
#84
tischi
closed
4 months ago
5
Add option to separate computations from visualisation
#83
tischi
opened
4 months ago
0
Improve improc documentation
#82
tischi
opened
4 months ago
1
Improve documentation for "detection" (and other frequently used terms)
#81
tischi
closed
1 month ago
0
ultrack CLI documentation clarification
#80
tischi
opened
4 months ago
1
Fix non-contiguous flow field and added EDT helper func
#79
JoOkuma
closed
4 months ago
1
Correct for jittering
#78
brunicardoso
opened
4 months ago
2
add widget to visualize hierarchical partitions from `segment` step
#77
JoOkuma
opened
4 months ago
1
rename `min_area` to `min_num_pixels`
#76
JoOkuma
opened
4 months ago
0
Segment detection
#75
tischi
opened
4 months ago
5
Control location of output files
#74
tischi
opened
4 months ago
1
Understanding the solver output
#73
tischi
opened
4 months ago
1
Update segmentation.py
#72
a-jacobo
closed
2 months ago
0
Adding nodes to database takes long time
#71
tischi
opened
4 months ago
5
warning during edge detection
#70
tischi
opened
4 months ago
0
normalize `labels_to_edges` output after blurring
#69
JoOkuma
closed
1 month ago
0
zarr dependency change and gurobi documentation improvement
#68
JoOkuma
closed
4 months ago
0
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