royerlab ultrack issues

royerlab / ultrack

Cell tracking and segmentation software

https://royerlab.github.io/ultrack

BSD 3-Clause "New" or "Revised" License

95 stars 12 forks source link

issues

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force detect_foreground to pick up small cells

#166 jazberna1 opened 2 days ago
0
Z dimension is altered after tracking runs

#165 jazberna1 closed 2 days ago
4
UltrackWidget: include `z` axis on 3d tracks

#164 ilan-theodoro closed 3 days ago
3
notebook tribolium_cartograph.ipynb KeyError: "'flow vectors' is not in list

#163 jazberna1 closed 2 weeks ago
2
not able to add multiple segmentation layers to 'Auto detect contours from labels' workflow in the Napari plugin

#162 jazberna1 closed 1 week ago
3
error in viewer.add_labels(detection, visible=True).contour = 2 of notebook tribolium_cartograph.ipynb

#161 jazberna1 closed 2 weeks ago
1
error running ultrack plugging inside fiji

#160 jazberna1 opened 2 weeks ago
11
Bump pandoc/actions from 1.0.0 to 1.1.0 in the github-actions group

#159 dependabot[bot] opened 3 weeks ago
0
`UltrackWidget` not displaying 3D tracks correctly

#158 JoOkuma closed 3 days ago
0
NameError: name 'detection' is not define

#157 jazberna1 closed 3 weeks ago
2
Tracks in 3D showing in Z-stack and not time channel, also error when trying to save the tracks (Napari Plugin)

#156 AKirschner88 closed 3 days ago
3
Node gt matching teun

#155 TeunHuijben closed 3 weeks ago
0
RuntimeError: Cannot initialize CUDA without ATen_cuda library

#154 jazberna1 closed 3 weeks ago
5
AttributeError: module 'numpy' has no attribute 'bool8'

#153 jazberna1 closed 3 weeks ago
2
Fix README install

#152 JoOkuma closed 1 month ago
0
Update installation instructions on Github

#151 bentaculum closed 1 month ago
1
Added functionality to get node features from segmentation hypotheses

#150 JoOkuma closed 1 month ago
1
Refactored link processing code and added add_links function

#149 JoOkuma closed 1 month ago
0
Question regarding location of datasets

#148 anwai98 opened 1 month ago
3
Improved array apply, adding automatic output array creation

#147 JoOkuma closed 1 month ago
0
Fix inverted EDT processing for dask arrays / non-binary masks

#146 JoOkuma closed 1 month ago
0
Multi SQL set/get generic function

#145 JoOkuma closed 1 month ago
0
Deprecate `HeuristicSolver`

#144 JoOkuma opened 1 month ago
0
Add nodes' probabilities support to cost function

#143 JoOkuma closed 1 month ago
1
Added bioraxiv to README

#142 JoOkuma closed 2 months ago
0
error in importing labels_to_contours

#141 brunicardoso opened 2 months ago
1
segmentation of non-timelapse datasets

#140 brunicardoso opened 2 months ago
1
Added option to query node features

#139 JoOkuma closed 1 month ago
1
`Tracker` API variable arguments bug

#138 JoOkuma opened 2 months ago
0
WIP in-memory database

#137 JoOkuma opened 3 months ago
0
Retrieve only instance segmentation masks

#136 ajinkya-kulkarni opened 3 months ago
3
Updating higra and gpu install docs

#135 JoOkuma closed 3 months ago
0
Fixing bug where segmentation mask falls outside of frame with interp…

#134 JoOkuma closed 2 months ago
0
Adding general callback to ultrack 3d video export

#133 JoOkuma closed 1 month ago
1
Update `pydantic` models from `v1` to actual version 2

#132 JoOkuma opened 4 months ago
0
Broken documentation paths links

#131 JoOkuma opened 4 months ago
0
Relaxing dependencies and moving to Hatch and Pixi

#130 JoOkuma closed 4 months ago
8
Update to `NumPy >= 2.0.0` and bump all other packages (especially `numba`)

#129 JoOkuma opened 4 months ago
3
Bump `napari` to `0.5.0` and updated ultrack to use plugin menus

#128 JoOkuma opened 4 months ago
4
Add docs for Napari widget and REST api

#127 ilan-theodoro closed 4 months ago
3
detecting fusion

#126 Aseem139 opened 4 months ago
1
Updated docs and renamed to_napari to to_tracks_layer

#125 JoOkuma closed 4 months ago
0
Include how to install `cucim` on windows

#124 JoOkuma opened 4 months ago
0
Error message when entering max area value

#123 akila-14 opened 4 months ago
0
Removing deprecated widgets

#122 JoOkuma closed 4 months ago
0
close_tracks_gaps creates bug in tracks dataframe

#121 TeunHuijben opened 4 months ago
0
Application to 3D images of mouse brain

#120 GiangTranHU closed 4 months ago
6
Update README.md

#119 bmoretti closed 4 months ago
1
Update README.md

#118 royerloic closed 4 months ago
1
Add `sigma_t` to `labels_to_contours`

#117 JoOkuma opened 4 months ago
0