issues
search
rtviii
/
riboxyz
htpps://ribosome.xyz
0
stars
0
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Integrate r2dt for rna chain viewing
#78
rtviii
opened
1 week ago
0
separate, polymer and structure apis, mesh work
#77
rtviii
closed
1 month ago
0
ETL Pipeline refactor + Ligand classification
#76
rtviii
closed
2 months ago
0
ETL Pipeline refactor
#74
rtviii
opened
2 months ago
1
Ligand Prediction
#73
rtviii
opened
3 months ago
0
Corrected ligand superpose implementation
#72
rtviii
closed
3 months ago
0
Landmarks
#71
rtviii
opened
4 months ago
0
Whole-structure `organism` designation: make sure the method is in sync with with RCSB
#70
rtviii
opened
4 months ago
0
LSU/SSU/Mitochondrial/Ligand Bound labels
#68
rtviii
closed
5 months ago
1
4TUD fails on polymers
#67
rtviii
opened
5 months ago
2
Move `classification_report` and `tunnel` data to the `RIBETL_DATA` instead of `assets`
#66
rtviii
closed
5 months ago
1
Ready to populate db
#65
rtviii
closed
5 months ago
0
Some compose changes, query optimization, cleanup
#64
rtviii
closed
5 months ago
0
Asset management
#63
rtviii
closed
5 months ago
0
PTC via tRNA locations [instead of fuzzy finding Doris et al. 2015 sequences]
#62
rtviii
opened
5 months ago
0
Streamline accesses to `ncbi` taxonomy db.
#61
rtviii
closed
5 months ago
1
Replace `citation_year` with `deposition_date` across the application -- more faithful marker
#60
rtviii
closed
3 months ago
1
Fetch other polymers from the db too.
#59
rtviii
opened
5 months ago
0
Asset Management Infrastructure
#58
rtviii
closed
3 months ago
0
[ribxz]TODOs before rerelease
#57
rtviii
closed
5 months ago
2
polymer endpoints
#56
rtviii
closed
5 months ago
0
Dial in the `sort by` feature
#55
rtviii
opened
5 months ago
1
Initial chimerax scripts + pagination arg for liststructs
#54
rtviii
closed
5 months ago
0
Replace `citation_year` with `deposition_date` across the database.
#53
rtviii
closed
2 months ago
1
Phylogeny on the graph
#52
rtviii
closed
6 months ago
0
Adapter works wiht Pydantic both ways. Great success
#51
rtviii
closed
6 months ago
0
Implement `SKIP` and `LIMIT` filtering in cypher
#50
rtviii
closed
5 months ago
0
neo4j adapter
#49
rtviii
closed
6 months ago
0
Refactor cypher ingestion functions.
#48
rtviii
closed
6 months ago
1
cleanup
#47
rtviii
closed
6 months ago
0
compose
#46
rtviii
closed
6 months ago
0
Split neo4j modules from the API
#45
rtviii
closed
6 months ago
1
abandoning sqlite idea. revert to neo4j
#44
rtviii
closed
6 months ago
0
Tunnel Quantization Issues solved
#43
rtviii
closed
6 months ago
0
Increase the number of gunicorn workers
#42
rtviii
closed
8 months ago
0
Got rid of the neo setup in dc
#41
rtviii
closed
8 months ago
0
Updated API: before hosting for ribovision
#40
rtviii
closed
8 months ago
0
Tunnel Extraction Protocol
#39
rtviii
closed
8 months ago
0
Merge tunnel work into master
#38
rtviii
closed
8 months ago
0
Rewrite asset file management
#37
rtviii
closed
5 months ago
1
Rewrite docker-compose file so as to eliminate neo4j
#36
rtviii
closed
6 months ago
1
Statistics dashboard a la gemmi
#35
rtviii
closed
5 months ago
0
Logging and ETL infrastructure
#34
rtviii
closed
5 months ago
1
Eliminate `neo4j` from the project.
#33
rtviii
closed
5 months ago
2
`OpenAPI` spec
#32
rtviii
closed
6 months ago
0
`enum_union`
#31
rtviii
opened
11 months ago
5
Open up to the more general biomolecule-agnostic implementation, rename the project.
#30
rtviii
closed
6 months ago
0
Get rid of all the absolute and local paths
#29
rtviii
closed
3 months ago
0
merge this old junk before epochal clean up
#28
rtviii
closed
11 months ago
0
merge factors + enum-based types
#27
rtviii
closed
1 year ago
0
Next