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ruanjue
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wtdbg2
Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly
GNU General Public License v3.0
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wtpoa-cns was hung
#71
UGYong
closed
5 years ago
19
polishing using wtpoa-cns
#70
fangli80
closed
5 years ago
1
good assemblies with low kmer coverage
#69
MichelMoser
closed
5 years ago
1
slower runtime in v2.3
#68
evanrrees
closed
5 years ago
4
Coverage ?
#67
ptranvan
closed
5 years ago
17
Parameters to change for high heterozygosity
#66
lstevens17
closed
5 years ago
2
Specific version of samtools ?
#65
bitcometz
closed
5 years ago
1
Output alternative contigs?
#64
fangli80
closed
5 years ago
5
no kmer peak value during runing wtdbg2,how to change the parameter of -k, -p, and -K
#63
feiyu007
closed
5 years ago
1
trace segments/sequences in contigs from dot file
#62
MichelMoser
closed
5 years ago
3
Assembly of 2 reads, 1 or 0 contig depending on number of threads
#61
GuillaumeHolley
closed
5 years ago
4
Updated README
#60
lh3
closed
5 years ago
0
No contig output for local assembly
#59
GuillaumeHolley
closed
5 years ago
2
Segmentation fault
#58
bitcometz
closed
5 years ago
6
low N50 for pacbio ultra-long reads
#57
gentlewasp
closed
5 years ago
4
Error when input *fq and *fa files simultaneously.
#56
zhouqiansolab
closed
5 years ago
5
question about polishing in wtpoa-cns
#55
TinaH10
closed
5 years ago
8
support for ".fasta"
#54
rlorigro
closed
5 years ago
5
abnormal node depth ???
#53
bitcometz
closed
5 years ago
3
how to set -K for repeats
#52
leleory
closed
5 years ago
1
kmer distribution
#51
leleory
closed
5 years ago
7
Will wtpoa-cns automatically exit after the run is complete?
#50
YangJianshun
closed
5 years ago
13
polish error
#49
gentlewasp
closed
5 years ago
4
wtdbg generate more contigs than smartdenovo
#48
Lordhooze
closed
5 years ago
1
much worse assembly N50 in new version of wtdbg2
#47
ishengtsai
closed
5 years ago
8
Polish command obsolete ( wtpoa-cns missing -d parameter)
#46
ishengtsai
closed
6 years ago
1
new parameters for wtdbg2
#45
bitcometz
closed
6 years ago
7
For the "ont" preset, change -L to 5000
#44
lh3
closed
6 years ago
2
added -g/-X to replace compound preset
#43
lh3
closed
6 years ago
1
Hanging when using one thread
#42
mrvollger
closed
6 years ago
4
a bug for --ctg-min-length?
#41
bitcometz
closed
6 years ago
5
Error rate / haplotype collapsing
#40
gbdias
closed
6 years ago
2
wtdbg-dot2gfa.pl does not work with contig dot file
#39
nickloman
closed
6 years ago
2
Fix typo in Makefile that breaks make install
#38
m-bull
closed
6 years ago
0
wtdbg2 hangs when creating *.1.dot.gz
#37
claczny
closed
6 years ago
1
Unable to install on linux x64
#36
ggstatgen
closed
6 years ago
8
Installation problem
#35
FAFUyangyang
closed
6 years ago
8
Reads longer than 256kb
#34
nickloman
closed
5 years ago
12
possible way to support ultra-long reads; DON'T MERGE!
#33
lh3
closed
6 years ago
2
Version 2.1 now in Homebrew Science
#32
tseemann
closed
6 years ago
1
Compiling with clang: fatal error: 'endian.h' file not found
#31
tseemann
closed
4 years ago
12
make install BIN=/new/path/bin fails
#30
tseemann
closed
6 years ago
0
-h is returning an error code
#29
tseemann
closed
6 years ago
1
Add -V option (or --version)
#28
tseemann
closed
6 years ago
0
"make install" should depend on $(PROGS)
#27
tseemann
closed
6 years ago
1
Give a warning if there are unused command-line arguments
#26
lh3
closed
6 years ago
0
-i with multiple files doesn't work properly / fails to throw error
#25
thackl
closed
6 years ago
3
Fixed typo in help.
#24
jvhaarst
closed
6 years ago
0
Assembly graph in GFA format
#23
sjackman
closed
6 years ago
11
A 7g genome
#22
chensunefu
closed
6 years ago
13
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