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saeyslab
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nichenetr
NicheNet: predict active ligand-target links between interacting cells
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Cannot find the following identities in the object: Other
#305
arunchakra
opened
6 days ago
0
DiffNicheNet for the same cell type in different time points?
#304
arunchakra
opened
1 week ago
0
assign_ligands_to_celltype erroe message
#303
wang2034
opened
2 weeks ago
1
Bump to v2.2.0
#302
csangara
closed
4 weeks ago
0
discrepancy in results output
#301
alessandrapas
closed
4 weeks ago
2
Change prioritization table and mushroom plot defaults
#300
csangara
closed
4 weeks ago
0
Update alias_to_symbol_seurat() behavior for v5 objects
#299
csangara
closed
1 month ago
0
Change error in `alias_to_symbol_seurat()` to warning
#298
csangara
closed
1 month ago
0
Naming convention in prioritization table
#297
csangara
closed
4 weeks ago
0
Only activating interactions or also repressing?
#296
innaaver
closed
1 month ago
1
when sender cell type is only one,
#295
jeffchen2000
closed
2 weeks ago
1
Receiver cells in differential analysis
#294
Cacti-Jiang
closed
1 month ago
1
How is the Ligand-Target-Matrix generated?
#293
Smeerlap
closed
2 weeks ago
2
Parallelization error when optimizing parameters for NicheNet
#292
tkapello
opened
1 month ago
4
Can NicheNet be used for analyzing three groups?
#291
Ldec12
closed
2 weeks ago
1
Clean up installation
#290
csangara
closed
1 month ago
1
RankActiveLigands Error
#289
riyaabiram
closed
2 months ago
0
Low AUPR values in analyses
#288
APuchkina
opened
2 months ago
4
Function generate_info_tables return an error
#287
pariaaliour
closed
2 months ago
3
Protein complex
#286
HMU-lyz
closed
2 weeks ago
1
Different results running. the same. code in different version. of
#285
pariaaliour
closed
1 month ago
6
Error in `Idents<-`: ! 'value' must be a factor or vector
#284
XIANZHE-LI
opened
2 months ago
3
Error in WhichCells.Seurat(object = object, idents = ident.2) : Cannot find the following identities in the object: Adjacent
#283
Noralii
closed
1 month ago
1
Error when passing the recorrect_umi argument in get_lfc_celltype
#282
NeuralBind
closed
1 month ago
1
`generate_prioritization_tables` warnings and documentation
#281
csangara
opened
4 months ago
0
Warning message in `predict_ligand_activities`
#280
csangara
opened
4 months ago
0
Fix bug in `generate_info_tables`
#279
csangara
closed
4 months ago
0
Error in `generate_info_tables`
#278
csangara
closed
4 months ago
0
Fixes `assign_ligands_to_celltype` when there are no general ligands
#277
csangara
closed
4 months ago
0
`assign_ligands_to_celltype` bug when there are no general ligands
#276
csangara
closed
4 months ago
0
Fix bugs in `assign_ligands_to_celltype`
#275
csangara
closed
4 months ago
0
Added checks for `get_exprs_avg` in case cell type names have an underscore
#274
csangara
closed
4 months ago
0
Fixed `make_line_plot` bugs
#273
csangara
closed
4 months ago
0
`make_line_plot` bugs
#272
csangara
closed
4 months ago
0
Condition_colname is not used for subsetting in nichenet_seuratobj_aggregate
#271
singlecellfan
closed
1 month ago
2
I can't install nichenet
#270
panchen007
closed
4 months ago
1
missing function for circos plot visualization
#269
cklee7
closed
4 months ago
2
cannot complete assign_ligands_to_celltype
#268
shawnshu1
closed
4 months ago
2
How should I assign a pathway/pathways to the target genes when running nichenetr?
#267
pariaaliour
closed
2 months ago
3
How to choose the best ligand to continue analysis with the potential ligand?
#266
pariaaliour
opened
5 months ago
0
`get_exprs_avg` changes underscore to hyphen in cell type names
#265
csangara
closed
4 months ago
0
what is ligand_tf_matrix for??
#264
yuzzini
closed
4 months ago
1
Preferable metric to infer cell-to-cell communication
#263
JoshuaCumming
closed
4 months ago
1
I cannot run the "get_weighted_ligand_receptor_links" and "prepare_ligand_receptor_visualization" while I have nichnetr installed
#262
pariaaliour
closed
4 months ago
2
Version 2.1
#261
csangara
closed
5 months ago
0
How exactly the ligand activity were calculate?
#260
iceautumn
closed
4 months ago
1
Fixed wrapper function for Seurat v5 objects
#259
csangara
closed
6 months ago
0
Error finding log fold change information of ligands from sender cells (Seurat V5 object)
#258
niksa01
closed
5 months ago
6
SeuratV5
#257
shayansaniei
closed
5 months ago
4
Identifying bonafide ligand-receptor pairs in the updated ligand-receptor database (V2)
#256
alecorr
opened
7 months ago
0
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