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saezlab
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CARNIVAL
CAusal Reasoning for Network Identification with integer VALue programming in R
https://saezlab.github.io/CARNIVAL/
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missing mouse progeny data
#50
Semple-bio
closed
2 years ago
1
Updates to the vignette and the README files
#49
BartoszBartmanski
closed
3 years ago
0
revise dependencies
#48
gabora
closed
3 years ago
1
Bug with invCARNIVAL: zero activation
#47
ivanovaos
closed
2 years ago
0
adding unit test for parse_cplex_log
#46
gabora
closed
3 years ago
0
Gabora cplex log
#45
gabora
closed
3 years ago
1
cplex log
#44
gabora
closed
3 years ago
0
Speed up for carnival
#43
hmkim
closed
3 years ago
2
Process quits with message "Killed"
#42
laylagerami
closed
3 years ago
4
Investigate the influence of beta weight on CARNIVAL output
#41
ivanovaos
closed
3 years ago
1
Save written constrainst to the file for the next runs of CARNIVAL
#40
ivanovaos
closed
3 years ago
1
variable not found issues
#39
gabora
closed
3 years ago
0
Update write_constraints_6.R
#38
gabora
closed
3 years ago
0
Update write_objective_function_all.R
#37
gabora
closed
3 years ago
0
Add new parameter to restricted cplex mem
#36
ivanovaos
closed
3 years ago
0
error when no solution found ?
#35
gabora
closed
2 years ago
4
Confusion about inputs for CARNIVAL
#34
anu-bioinfo
closed
3 years ago
5
inconsistent results
#33
gabora
closed
2 years ago
1
Provide goodness of fit in the output together with the gap
#32
ivanovaos
closed
1 year ago
0
Document the output
#31
ivanovaos
closed
3 years ago
2
Added gurobi option to solver
#30
djinnome
closed
3 years ago
7
Investigate if it's possible to cache the results with cplex
#29
ivanovaos
closed
1 year ago
0
Saving opimization parameters as part of the CARNIVAL output
#28
ivanovaos
closed
3 years ago
0
Saving results step is very slow
#27
ivanovaos
closed
1 year ago
1
Constraint writing takes a very long time
#26
ivanovaos
closed
2 years ago
3
reporting removed nodes
#25
gabora
closed
3 years ago
3
node name fixing
#24
gabora
closed
3 years ago
3
weightObj error
#23
sugyun
closed
4 years ago
6
Missining complete tutorial
#22
michelegentili93
closed
1 year ago
6
runCARNIVAL providing solverPath without solver name leads to lpSolve being run
#21
ivanovaos
closed
3 years ago
1
Vignette missing
#20
kunstner
closed
4 years ago
2
Release of new GitHub page
#19
christianholland
closed
4 years ago
4
generate_measfile() returns: object 'folderpath' not found
#18
dereckmezquita
closed
4 years ago
1
Saving CARNIVAL outputs
#17
LaraFuhrmann
closed
4 years ago
1
R version requirement
#16
ahmedasadik
closed
3 years ago
2
Memory issues when writing constraints
#15
vvvieira
closed
3 years ago
2
Carnival test
#14
enio23
closed
3 years ago
0
Update testing
#13
enio23
closed
4 years ago
0
Bioc dev
#12
enio23
closed
4 years ago
0
Incorrect assignment of input values
#11
enio23
closed
5 years ago
1
current_dir and dir_name conflict
#10
rosherbal
closed
5 years ago
1
Fix parallelisation pipeline
#9
ptrairatphisan
closed
5 years ago
0
Remove 'tidyverse' dependency
#8
ptrairatphisan
closed
5 years ago
6
Enrichment analysis for CARNIVAL
#7
ptrairatphisan
closed
5 years ago
4
[exportResult.R] ZeroAct column missed some values
#6
ptrairatphisan
closed
5 years ago
1
Windows linux support
#5
ptrairatphisan
closed
5 years ago
1
Careful with protein identifiers in CARNIVAL
#4
enio23
closed
5 years ago
2
Documentation + Prep files for R-package release
#3
ptrairatphisan
closed
5 years ago
4
Test Pull Request from enio23
#2
enio23
closed
5 years ago
1
Anika preprocess analysis
#1
anikaliu
closed
5 years ago
7
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