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saezlab
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MetaProViz
R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.
https://saezlab.github.io/MetaProViz/
GNU General Public License v3.0
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Update Hexagon
#35
ChristinaSchmidt1
closed
1 year ago
0
ORA (Pathway analysis)
#34
ChristinaSchmidt1
closed
1 year ago
2
enable Github actions
#33
ChristinaSchmidt1
closed
1 year ago
3
Create: unit testing
#32
ChristinaSchmidt1
opened
1 year ago
0
Visualisation - colour/plots for pathways
#31
ChristinaSchmidt1
closed
1 year ago
3
Viz: Merge Bar/Violin/box plots and superplots
#30
ChristinaSchmidt1
closed
10 months ago
18
MCA - Nomeclature
#29
ChristinaSchmidt1
closed
1 year ago
0
Functional analysis: MCA - add distance method
#28
ChristinaSchmidt1
opened
1 year ago
2
VizHeatmap - remove and report pathways with only 1 metabolite
#27
dprymidis
closed
1 year ago
3
Functional analysis: MCA - Add kmeans clustering to MCA
#26
dprymidis
opened
1 year ago
3
Preprocessing - Add `Pool_Estimation`
#25
dprymidis
closed
1 year ago
9
DMA missing values
#24
ChristinaSchmidt1
closed
1 year ago
2
DMA - testing data distribution
#23
ChristinaSchmidt1
closed
1 year ago
5
Save Data tables
#22
ChristinaSchmidt1
closed
1 year ago
1
pre-processing MVI
#21
ChristinaSchmidt1
closed
1 year ago
8
DMA function - Input_data
#20
ChristinaSchmidt1
closed
1 year ago
6
Preprocessing comment
#19
ChristinaSchmidt1
closed
1 year ago
1
Function and output folder names
#18
dprymidis
closed
1 year ago
0
DMA --> Mean of a metabolite = 0
#17
ChristinaSchmidt1
closed
1 year ago
2
Make Bioconductor package
#16
ChristinaSchmidt1
closed
1 year ago
1
Lollipop graphs for multiple comparisons
#15
ChristinaSchmidt1
closed
1 year ago
2
Visualisation - add pathway parameter for heatmap, Volcano and lollipop graph
#14
ChristinaSchmidt1
closed
1 year ago
1
Volcano plot pathway names
#13
ChristinaSchmidt1
closed
1 year ago
4
Metabolite clusters - parameter plot=TRUE/FALSE
#12
ChristinaSchmidt1
closed
1 year ago
1
vignette and website .io
#11
ChristinaSchmidt1
closed
1 year ago
2
Preprocessing - Potential outliers (95%) and PCA
#10
ChristinaSchmidt1
closed
1 year ago
6
In preprocessing add ExportQCPlots=TRUE
#9
ChristinaSchmidt1
closed
1 year ago
3
DMA - statistical test
#8
ChristinaSchmidt1
closed
1 year ago
2
Syntax
#7
ChristinaSchmidt1
closed
1 year ago
3
MetaProViz::Preprocessing - CoRE=TRUE: Media blank samples - Enable removal of single metabolite values?
#6
ChristinaSchmidt1
opened
1 year ago
42
Log2FC for CoRe data
#5
ChristinaSchmidt1
closed
1 year ago
3
Add t-value to DMA
#4
ChristinaSchmidt1
closed
1 year ago
3
Vignette
#3
ChristinaSchmidt1
closed
1 year ago
3
80% filtering rule
#2
ChristinaSchmidt1
closed
1 year ago
1
Pre-processing Output
#1
ChristinaSchmidt1
closed
1 year ago
12
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