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sanger-pathogens
/
Bio-Tradis
A set of tools to analyse the output from TraDIS analyses
https://sanger-pathogens.github.io/Bio-Tradis/
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Replace cram file without reads
#87
ssjunnebo
closed
6 years ago
0
Using Bio-Tradis to analyze mariner-transposon library
#86
minisciencegirl
closed
4 years ago
8
update tutorial for ENA switch to https (from http)
#85
lbarquist
closed
6 years ago
0
Installation on Ubuntu 17.10 fails
#84
apeltzer
closed
6 years ago
2
Port 18 volume discrepancy?
#83
ucpete
closed
6 years ago
6
include last base of annotation in insertion count
#82
lbarquist
closed
6 years ago
0
Duplicate genes
#81
ppgardne
closed
6 years ago
4
Installing Bio-Tradis Fail
#80
minisciencegirl
closed
6 years ago
6
Rename license file'
#79
ssjunnebo
closed
7 years ago
0
update AUTHORS and rename LICENSE
#78
ssjunnebo
closed
7 years ago
0
Tmp file time stamp
#77
ssjunnebo
closed
7 years ago
0
try localtime for tmp file timestamp
#76
ssjunnebo
closed
7 years ago
0
cpan update?
#75
lbarquist
closed
7 years ago
1
modified ranges to accommodate higher density insertion data
#74
lbarquist
closed
7 years ago
0
removed File::Slurp
#73
vaofford
closed
7 years ago
0
dont add POD to R scripts
#72
andrewjpage
closed
7 years ago
0
tradis_comparison.R error
#71
DanMediati
closed
7 years ago
3
change to dist zilla starter bundle
#70
nds
closed
8 years ago
0
switch PCR primers
#69
andrewjpage
closed
8 years ago
0
updated readme
#68
lbarquist
closed
8 years ago
0
Fix for bug #66, change mapping_score option spec in B::T::CL::PlotTradis
#67
RoyChaudhuri
closed
8 years ago
0
Mapping score always set to 1 if -m option used with plot_tradis
#66
RoyChaudhuri
closed
8 years ago
0
Merge Roys changes
#65
andrewjpage
closed
8 years ago
0
Added support for samtools 1.x, -n multi-core option and fixed -m default
#64
RoyChaudhuri
closed
8 years ago
2
Error in step 3.5 of bacteria_tradis, using samtools 1.3
#63
juanu
closed
8 years ago
1
added recipes (again)
#62
lbarquist
closed
8 years ago
0
fixes for revision
#61
lbarquist
closed
8 years ago
0
bugfix to tradis_essentiality.R
#60
lbarquist
closed
8 years ago
0
Bump the version number
#59
bewt85
closed
8 years ago
0
Ticket 463867: What if a tag isn't found?
#58
bewt85
closed
8 years ago
0
updated bacteria_tradis help messages
#57
lbarquist
closed
8 years ago
0
Add package version module to dist zilla
#56
andrewjpage
closed
8 years ago
0
Added sequencing recipes
#55
lbarquist
closed
8 years ago
0
updated help messages for R scripts
#54
lbarquist
closed
8 years ago
0
POD formatting
#53
andrewjpage
closed
8 years ago
0
Simplify installation
#52
andrewjpage
closed
8 years ago
0
Ticket 473325: Install two different versions of SAMTOOLS
#51
bewt85
closed
9 years ago
0
Add TravisCI support
#50
bewt85
closed
9 years ago
1
fixed filtering bug
#49
lbarquist
closed
9 years ago
0
Updated shebang line in R scripts for portability
#48
carlacummins
closed
9 years ago
0
added installation notes
#47
lbarquist
closed
9 years ago
0
only require 2 command line args, not 3
#46
lbarquist
closed
9 years ago
0
Bug fixes and added features
#45
carlacummins
closed
9 years ago
0
Adding tabix a prerequisite
#44
js21
closed
9 years ago
0
Cram file output
#43
andrewjpage
closed
9 years ago
0
Code is now cross-platform
#42
js21
closed
9 years ago
0
Pass through samtools exec and verbose mode
#41
andrewjpage
closed
9 years ago
0
Cram support
#40
andrewjpage
closed
9 years ago
0
added the missing test files
#39
js21
closed
9 years ago
0
suppressed uninitialised warnings when importing PE data
#38
carlacummins
closed
9 years ago
0
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