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segrelab
/
cometspy
Python interface for running COMETS simulations and analyzing the results
GNU General Public License v3.0
11
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NaN returned in total biomass log due to default biomass parameters
#53
zoey-rw
opened
1 month ago
2
Parsing intermediate files to match final outputs
#52
zoey-rw
opened
2 months ago
1
allow objective function to be a sum of multiple reactions
#51
andreastallvik
closed
4 months ago
1
'comets.py' error
#50
2132030
opened
4 months ago
20
error('COMETS_HOME environmental variable is not set')
#49
2132030
closed
4 months ago
1
Modifying the effect of the death rate
#48
zoey-rw
closed
2 months ago
1
Changing upper bound of objective function to limit growth
#47
zoey-rw
closed
2 months ago
1
UnicodeDecodeError: 'utf-8'
#46
complicatedZ
opened
6 months ago
4
Change optimizer from Gurobi to GLPK
#45
weeklymessage
closed
4 months ago
9
Biomass coordinates don't match the flux coordinates
#44
hgscott
opened
9 months ago
3
Print progression messages from COMETS while it is running
#43
hgscott
opened
10 months ago
0
The function or variable 'getSecAbsExcMets' is not recognized
#42
yqq-79
opened
10 months ago
3
Models input order affect metabolites flux and biomass.
#41
Shlomit840
opened
10 months ago
7
Add a descriptive landing page to the docs
#40
hgscott
closed
10 months ago
0
Add links in the Navigation Pane
#39
hgscott
closed
10 months ago
1
Make an installation page
#38
hgscott
opened
10 months ago
0
Make template/set of best practices for writing docstrings
#37
hgscott
opened
10 months ago
0
Write a landing page for the documentation
#36
hgscott
closed
10 months ago
4
Docs
#35
hgscott
closed
10 months ago
0
Change the name of the default branch to main
#34
hgscott
opened
10 months ago
0
`line_terminator` is deprecated
#33
hgscott
opened
1 year ago
1
Add a project description on PyPI
#32
hgscott
opened
1 year ago
0
Fix "notable" and set_specific_metabolite bugs
#31
hgscott
closed
1 year ago
0
Update documentation
#30
hgscott
closed
10 months ago
10
Automate releases
#29
hgscott
opened
1 year ago
0
Add ignore_index to set_specific_metabolite
#28
hgscott
closed
1 year ago
0
Add spaces in warning messages
#27
hgscott
closed
1 year ago
0
Pandas errors when checking layout
#26
hgscott
closed
1 year ago
15
Warning prints “notable” instead of “not able”
#25
hgscott
closed
1 year ago
0
Change jamtio.jar to jmatio.jar
#24
hgscott
closed
1 year ago
0
Typo in jmatio path
#23
hgscott
closed
1 year ago
0
Problem with set_specific_metabolite_at_location.
#22
dukovski
opened
1 year ago
0
Bump setuptools from 51.0.0 to 65.5.1 in /docs
#21
dependabot[bot]
closed
1 year ago
0
weird behavior with `static` compounds
#20
hariszaf
opened
1 year ago
3
Inital pop list
#19
hgscott
closed
1 year ago
0
Setting Initial Populations in a Loop
#18
hgscott
closed
1 year ago
5
Growth rate after setting media concentration and parame
#17
behzadk
opened
2 years ago
1
KeyError: 'COMETS_HOME'
#16
merveyrc
opened
2 years ago
12
the method of cometspy.comets() can not working properly
#15
wupeng1998
closed
2 years ago
1
Compatibility issue with different model implementations?
#14
bigsuicideparty
closed
2 years ago
3
Potential bug in signalling
#13
behzadk
closed
2 years ago
2
Using positive lower bound produces unexpected behaviour
#12
behzadk
closed
2 years ago
19
error when following case study: Studying the evolution citrate utilization in the Long Term Evolution Experiment.
#11
beacamara
closed
3 years ago
11
error in comets.py: self.total_biomass = self.total_biomass.astype('float')
#10
beacamara
closed
3 years ago
8
Error when reading a model.cmd
#9
beacamara
closed
3 years ago
4
Media index bug
#8
sulheim
closed
2 years ago
3
fixed working directory and also fixed non-default diff consts not being set
#7
jeremymchacon
closed
3 years ago
0
signaling bugfixes
#6
jeremymchacon
closed
3 years ago
0
2 small commits to fix path issues and make more specific setup.py for pypi
#5
jeremymchacon
closed
3 years ago
0
small typo in env variable
#4
jeremymchacon
closed
3 years ago
0
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