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seoanezonjic
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ExpHunterSuite
RNA-seq gene expression analysis suite
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Remove miRBaseConvertr
#63
JoseCorCab
closed
9 months ago
0
Actions test
#62
AEstebanMar
closed
10 months ago
0
Drop qc
#61
AEstebanMar
closed
11 months ago
0
Remove bcplogs if threre are 0 errors after executions
#60
JoseCorCab
closed
11 months ago
0
problems with install ExpHunterSuite on my Mac(R version4.2.1)
#59
Caoyu819
closed
1 year ago
2
Add fpkm metric to degenes_hunter results table
#58
JoseCorCab
closed
1 year ago
0
parental cleaning in Disease Ontology
#57
JoseCorCab
opened
1 year ago
0
New script for customize functional plot for papers
#56
JoseCorCab
closed
1 year ago
0
Filter modules for clusters_main_report
#55
JoseCorCab
closed
11 months ago
0
Add log2FC distribution for each functional category
#54
JoseCorCab
closed
11 months ago
0
Add mean counts to the degenes_hunter.R output table
#53
JoseCorCab
closed
1 year ago
0
Vulcano plot with integrated metrics
#52
JoseCorCab
closed
1 year ago
0
Error in plot.window(...)
#51
Luiky1
closed
2 years ago
1
Recover differential conectivity analysis with CeTF bioconductor package
#50
seoanezonjic
opened
2 years ago
0
Separate normalization method ans differential expression
#49
JoseCorCab
closed
1 year ago
0
Add filter in count table to remove genes with low variability
#48
seoanezonjic
closed
1 year ago
0
transpose option name from scale_data_matrix should change
#47
JoseCorCab
closed
1 year ago
0
Bioconductor version
#46
seoanezonjic
closed
3 years ago
0
A new plot to compare module membership distributions is needed
#45
JoseCorCab
closed
3 years ago
0
Functional Hunter error in has_pairsim(x)
#44
ElenaRojano
closed
1 year ago
0
Load functional hunter results object from functional results folder
#43
fmjabato
closed
1 year ago
0
Path error for Functional Hunter organism_table.txt file (no debug mode)
#42
ElenaRojano
closed
3 years ago
1
WGCNA correlation method
#41
JoseCorCab
closed
1 year ago
1
Duplicated lines and names in output ExpAnalysis results
#40
fmjabato
closed
3 years ago
0
Output folders are being created by degenes_hunter function
#39
fmjabato
closed
1 year ago
2
Improve cluster specific plots in Functional Hunter
#38
ElenaRojano
closed
11 months ago
0
Discard Noiseq in prevalent tagging when is disabled
#37
seoanezonjic
closed
1 year ago
1
Incorporate translation for IDs over than ENSEMBL
#36
JoseCorCab
closed
1 year ago
0
Perform functional enrichment for all modules with high correlation with traits together
#35
JoseCorCab
closed
1 year ago
0
Change method for generate paths
#34
JoseCorCab
closed
3 years ago
1
Test a new emaplot layout for main_cluster_report
#33
JoseCorCab
closed
1 year ago
0
Move or remove small functions in functional_report.Rmd
#32
JoseCorCab
closed
1 year ago
1
Add a conditional for print cnetplots
#31
JoseCorCab
closed
1 year ago
1
Add emaplot to cluster reports
#30
fmjabato
closed
3 years ago
1
Complete clusters reports information
#29
JoseCorCab
closed
1 year ago
1
General clustering report
#28
ElenaRojano
closed
4 years ago
2
Custom specific enrichments for clusters are not performed
#27
JoseCorCab
closed
4 years ago
2
Correlate Treat factor by default in WGCNA perform
#26
JoseCorCab
closed
3 years ago
1
Group cluster numbers to table
#25
ElenaRojano
closed
4 years ago
1
Heatmap in cluster specific report
#24
JoseCorCab
closed
1 year ago
1
Due to problem in merge of DE analysis table (big table) with PCIT results, the big table is too small - it loses the filtered out genes.
#23
jimrperkins
closed
4 years ago
1
Improve text on barplot in expression report showing how many genes pass each phase of analysis
#22
jimrperkins
closed
4 years ago
1
Cluster dedicated funtional report for non computable functional enrichments
#21
JoseCorCab
closed
1 year ago
1
1 to many ID correspondance when translating
#20
JoseCorCab
closed
1 year ago
1
Loss of gene ID when translating from Ensmbl to Entrez
#19
JoseCorCab
closed
1 year ago
1
Incorporate gene symbols to functional cluster report
#18
JoseCorCab
closed
3 years ago
1
"ggupset" in functional report
#17
fmjabato
closed
4 years ago
1
Error in WGCNA
#16
JoseCorCab
closed
4 years ago
0
clusterProfileR simplify option activation
#15
JoseCorCab
closed
1 year ago
0
Functional hunter doesn't work
#14
JoseCorCab
closed
4 years ago
2
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