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seqan
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raptor
A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.
https://docs.seqan.de/raptor
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[INFRA] enable ccache in workflow CI
#301
eseiler
closed
1 year ago
2
[INFRA] Reactivate gcc13 cpp23
#300
eseiler
closed
1 year ago
2
[TEST] Update options_test
#299
eseiler
closed
1 year ago
2
[MISC] Remove compression for HIBF
#298
smehringer
closed
1 year ago
2
[INFRA] Update chopper
#297
smehringer
closed
1 year ago
2
[MISC] GCC13 support
#296
eseiler
closed
1 year ago
2
[MISC] Remove dependence on seqan3::views::chunk.
#295
smehringer
closed
1 year ago
2
Bump DoozyX/clang-format-lint-action from 0.15 to 0.16
#294
dependabot[bot]
closed
1 year ago
1
[MISC] Reduce complexity of insert_into_ibf.
#293
smehringer
closed
1 year ago
2
Bump PuneetMatharu/cmake-format-lint-action from 1.0.1 to 1.0.2
#292
dependabot[bot]
closed
1 year ago
2
[MISC] Minor changes that will ease the transition once we move to the HIBF library
#291
smehringer
closed
1 year ago
2
[INFRA] Update chopper
#290
smehringer
closed
1 year ago
2
[DOC] Add placeholder README
#289
eseiler
closed
1 year ago
1
[UTIL] New metagraph scripts
#288
eseiler
closed
1 year ago
1
[FEATURE] Add R plot about Refseq timings
#287
smehringer
closed
1 year ago
2
[MISC] Compare update.
#286
smehringer
closed
1 year ago
2
[MISC] Change verbose to quiet
#285
eseiler
closed
1 year ago
2
[INFRA] Restructure util
#284
eseiler
closed
1 year ago
1
[UTIL] Genome Biology scripts
#283
smehringer
closed
1 year ago
2
[FEATURE] HIBF paper: Truth comparison for all tools.
#282
smehringer
closed
1 year ago
2
[MISC] use less memory for raptor prepare
#281
eseiler
closed
1 year ago
1
[MISC] Change positional option to option
#280
eseiler
closed
1 year ago
2
[MISC] IBF build: stream instead of caching
#279
eseiler
closed
1 year ago
2
[FEATURE] Write hashes into search output
#278
eseiler
closed
1 year ago
1
[FIX] possibly ambiguous if/else
#277
eseiler
closed
1 year ago
1
Adapt IBF build algorithm
#276
eseiler
closed
1 year ago
0
[MISC] Throw if layout config required but not available
#275
eseiler
closed
1 year ago
2
Write number of hashes into search output
#274
eseiler
closed
1 year ago
0
Throw if layout config is not readable
#273
eseiler
closed
1 year ago
0
[FEATURE] Read chopper layout config
#272
eseiler
closed
1 year ago
2
[FEATURE] Create list file in raptor prepare
#271
eseiler
closed
1 year ago
1
Add examples for --input / --output parameters
#270
eseiler
opened
1 year ago
0
Write list file when using raptor prepare
#269
eseiler
closed
1 year ago
0
[INFRA] Update sharg-parser
#268
eseiler
closed
1 year ago
1
[MISC] Update raptor layout parser
#267
eseiler
closed
1 year ago
2
Read parameters from layout file
#266
eseiler
closed
1 year ago
0
Some changes that I've made over the time.
#265
smehringer
opened
1 year ago
2
[INFRA] Update chopper submodule.
#264
smehringer
closed
1 year ago
1
[INFRA] Update benchmark
#263
eseiler
closed
1 year ago
2
[FEATURE] more precise FPR correction
#262
eseiler
closed
1 year ago
1
[DOC] update parser
#261
eseiler
closed
1 year ago
2
[TEST] increase coverage
#260
eseiler
closed
1 year ago
2
[INFRA] Update CI
#259
eseiler
closed
1 year ago
1
[DOC] Show cpp files
#258
eseiler
closed
1 year ago
2
[DOC] Show graphs
#257
eseiler
closed
1 year ago
2
[MISC] updates
#256
eseiler
closed
1 year ago
2
[WIP] raptor upgrade
#255
eseiler
closed
1 year ago
2
[INFRA] Update gcovr
#254
eseiler
closed
1 year ago
2
[FIX] ambiguous index
#253
eseiler
closed
1 year ago
2
[MISC] Make timer conditionally thread-safe
#252
eseiler
closed
1 year ago
2
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