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seqan
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raptor
A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.
https://docs.seqan.de/raptor
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[DOC] tutorial part 2
#336
eseiler
closed
1 year ago
2
[DOC] Reference documentation in README
#335
eseiler
closed
1 year ago
1
[UTIL] Update fig_5_RefSeq_all_tools.R
#334
eseiler
closed
1 year ago
2
[UTIL] Add R scripts for figure 4 and 9.
#333
smehringer
closed
1 year ago
2
[DOC] Update tutorial part 1
#332
eseiler
closed
1 year ago
2
[UTIL] Add R scripts for plots
#331
eseiler
closed
1 year ago
2
[MISC] HIBF building via std::function
#330
smehringer
closed
1 year ago
3
[MISC] Replace seqan3::views::slice with std::span
#329
eseiler
closed
1 year ago
2
[MISC] Use seqan::std::views
#328
eseiler
closed
1 year ago
2
[MISC] HIBF building via function
#327
eseiler
closed
1 year ago
2
[MISC] HIBF building via function
#326
eseiler
closed
1 year ago
1
[MISC] Adapt hibf building to range over hashes.
#325
smehringer
closed
1 year ago
1
[MISC] Store build_arguments in build_data.
#324
smehringer
closed
1 year ago
2
[MISC] Reuse compute_kmers in insert_to_ibf.
#323
smehringer
closed
1 year ago
1
[MISC] Separate layout file parsing and inititalising the build-tree.
#322
smehringer
closed
1 year ago
2
[MISC] Some restructering.
#321
smehringer
closed
1 year ago
2
[INFRA] update chopper
#320
eseiler
closed
1 year ago
2
[MISC] Move records
#319
eseiler
closed
1 year ago
1
[MISC] Run clang-format
#318
eseiler
closed
1 year ago
2
[MISC] Separate parsing the layout content and building the build-tree.
#317
smehringer
closed
1 year ago
2
[MISC] clang-format: put lemon headers first
#316
eseiler
closed
1 year ago
1
[MISC] update update_header_node_data
#315
eseiler
closed
1 year ago
1
To-do: Changes that affect serialization
#314
eseiler
opened
1 year ago
0
[MISC] Separate parsing the layout header and building the build-tree.
#313
smehringer
closed
1 year ago
2
[MISC] Use fp correction computation from chopper.
#312
smehringer
closed
1 year ago
2
[MISC] Remove compression
#311
eseiler
closed
1 year ago
2
[MISC] Remove filenames from HIBF data structure
#310
smehringer
closed
1 year ago
2
[MISC] Remove filenames from chopper_pack_record.
#309
smehringer
closed
1 year ago
2
[MISC] Remove filenames from chopper_pack_record.
#308
smehringer
closed
1 year ago
1
[MISC] Remove unused functions.
#307
smehringer
closed
1 year ago
2
[MISC] User chopper::layout::layout::user_bin in build records.
#306
smehringer
closed
1 year ago
2
[MISC] Use chopper::layout::layout::max_bin when parsing the header.
#305
smehringer
closed
1 year ago
2
[INFRA] Update chopper
#304
eseiler
closed
1 year ago
2
update benchmarks
#303
Austernpilz
closed
1 year ago
1
[INFRA] enable ccache in workflow CI
#301
eseiler
closed
1 year ago
2
[INFRA] Reactivate gcc13 cpp23
#300
eseiler
closed
1 year ago
2
[TEST] Update options_test
#299
eseiler
closed
1 year ago
2
[MISC] Remove compression for HIBF
#298
smehringer
closed
1 year ago
2
[INFRA] Update chopper
#297
smehringer
closed
1 year ago
2
[MISC] GCC13 support
#296
eseiler
closed
1 year ago
2
[MISC] Remove dependence on seqan3::views::chunk.
#295
smehringer
closed
1 year ago
2
Bump DoozyX/clang-format-lint-action from 0.15 to 0.16
#294
dependabot[bot]
closed
1 year ago
1
[MISC] Reduce complexity of insert_into_ibf.
#293
smehringer
closed
1 year ago
2
Bump PuneetMatharu/cmake-format-lint-action from 1.0.1 to 1.0.2
#292
dependabot[bot]
closed
1 year ago
2
[MISC] Minor changes that will ease the transition once we move to the HIBF library
#291
smehringer
closed
1 year ago
2
[INFRA] Update chopper
#290
smehringer
closed
1 year ago
2
[DOC] Add placeholder README
#289
eseiler
closed
1 year ago
1
[UTIL] New metagraph scripts
#288
eseiler
closed
1 year ago
1
[FEATURE] Add R plot about Refseq timings
#287
smehringer
closed
1 year ago
2
[MISC] Compare update.
#286
smehringer
closed
1 year ago
2
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