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seqan
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seqan3
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
https://www.seqan.de
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Use explicit _MM_PERM_ENUM type for intrinsics.
#3285
rrahn
closed
5 hours ago
3
[FIX] API tests
#3284
eseiler
closed
4 days ago
2
Improve SAM tag handling
#3283
eseiler
opened
1 week ago
0
Score prealigned sequences
#3282
tkramer-motion
opened
2 weeks ago
0
[INFRA] API Stability
#3281
eseiler
closed
3 weeks ago
2
[CRON] API-Stability
#3280
eseiler
closed
4 days ago
4
Adds missing char8_t type to list of viable char types for which char adaption works.
#3279
rrahn
closed
3 weeks ago
2
[FIX] gcc-15: Better bogus memcpy fix
#3278
eseiler
closed
1 month ago
2
[INFRA] Nightly fixes
#3277
eseiler
closed
1 month ago
2
[MISC] clang-format-18
#3276
eseiler
closed
1 month ago
2
[DOC] Remove vercel
#3275
eseiler
closed
1 month ago
2
[FIX] Codecov
#3274
eseiler
closed
1 month ago
1
[INFRA] Documentation preview
#3273
eseiler
closed
1 month ago
0
[TEST] Preview deployment
#3272
eseiler
closed
1 month ago
1
Alignment of sequences consisting of arbitrary 64 bit integers
#3271
paoloshasta
closed
1 month ago
14
[INFRA] CI and Compilers
#3270
eseiler
closed
1 month ago
2
Fixes #3266: Incorrect begin/end of alignment for banded alignment
#3269
rrahn
closed
1 month ago
2
Fix/issue_3264
#3268
rrahn
closed
1 month ago
2
Alphabet conversion is not properly constrained
#3267
rrahn
closed
1 month ago
5
Incorrect begin/end of alignment for banded alignment
#3266
paoloshasta
closed
1 month ago
3
Question regarding the usage of `seqan3::fm_index_cursor` using `seqan3::bitpacked_sequence`.
#3264
Dhruv-mak
closed
1 month ago
4
Bump fsfe/reuse-action from 3 to 4
#3263
dependabot[bot]
closed
1 month ago
2
[FIX] Correctly propagate the constness of the inner range type.
#3262
rrahn
closed
1 month ago
1
[INFRA] Update contrib/std
#3261
eseiler
closed
1 month ago
1
[INFRA] Update SDSL
#3260
eseiler
closed
1 month ago
1
Updated PR for the printer design proposal
#3259
rrahn
closed
3 weeks ago
3
Sporadic failures in FM-index creation in a multi-threading context
#3258
behrj
closed
1 month ago
10
[FIX] clang-18
#3257
eseiler
closed
2 months ago
1
[FEATURE] Accept user-defined tags
#3256
eseiler
closed
1 week ago
3
Multi-threading, banding, other speed-ups
#3255
jaysunl
opened
3 months ago
3
Refactor selection of Myers' bitparallel edit distance algorithm.
#3254
rrahn
closed
2 months ago
1
Allow min_score alignment config for arbitrary (user defined) edit distance schemes
#3253
feldroop
closed
2 months ago
4
[FIX] Missing include
#3252
eseiler
closed
3 months ago
2
Unsupported sam headers get silently stripped
#3251
notestaff
closed
1 week ago
2
appending records to a .bam
#3250
notestaff
opened
5 months ago
1
Bump fsfe/reuse-action from 2 to 3
#3249
dependabot[bot]
closed
5 months ago
2
[MISC] Refine unknown tag handling (HD/PG)
#3248
eseiler
closed
2 months ago
2
[DOC] unknown tags will not throw
#3247
eseiler
closed
5 months ago
2
[FEATURE] Allow setting warning stream for sam file
#3246
eseiler
closed
5 months ago
2
[MISC] Remove gcc14 workaround
#3245
eseiler
closed
5 months ago
3
[MISC] Improve error message when using kmer_hash_view with invalid shapes
#3244
eseiler
closed
5 months ago
2
fix,doc: condition of the max number of 1s inside a shape.
#3243
SGSSGene
closed
5 months ago
2
The shape size for the kmer_hash.
#3242
Jappy0
closed
5 months ago
3
[MISC] gcc 14 workaorund
#3241
eseiler
closed
5 months ago
2
[FIX] CPP23
#3240
eseiler
closed
5 months ago
2
single-thread mode
#3239
notestaff
opened
6 months ago
4
doc,fix: variable bgzf_thread_count is no longer static
#3238
SGSSGene
closed
6 months ago
2
small documentation error
#3237
notestaff
closed
6 months ago
2
sam tags functions
#3236
notestaff
closed
3 months ago
4
creating SAM file headers
#3235
notestaff
opened
6 months ago
1
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