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seqan
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seqan3
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
https://www.seqan.de
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[FIX] clang-18
#3257
eseiler
closed
5 months ago
1
[FEATURE] Accept user-defined tags
#3256
eseiler
closed
3 months ago
3
Multi-threading, banding, other speed-ups
#3255
jaysunl
opened
6 months ago
3
Refactor selection of Myers' bitparallel edit distance algorithm.
#3254
rrahn
closed
5 months ago
1
Allow min_score alignment config for arbitrary (user defined) edit distance schemes
#3253
feldroop
closed
5 months ago
4
[FIX] Missing include
#3252
eseiler
closed
6 months ago
2
Unsupported sam headers get silently stripped
#3251
notestaff
closed
3 months ago
2
appending records to a .bam
#3250
notestaff
opened
8 months ago
1
Bump fsfe/reuse-action from 2 to 3
#3249
dependabot[bot]
closed
8 months ago
2
[MISC] Refine unknown tag handling (HD/PG)
#3248
eseiler
closed
5 months ago
2
[DOC] unknown tags will not throw
#3247
eseiler
closed
8 months ago
2
[FEATURE] Allow setting warning stream for sam file
#3246
eseiler
closed
8 months ago
2
[MISC] Remove gcc14 workaround
#3245
eseiler
closed
8 months ago
3
[MISC] Improve error message when using kmer_hash_view with invalid shapes
#3244
eseiler
closed
8 months ago
2
fix,doc: condition of the max number of 1s inside a shape.
#3243
SGSSGene
closed
8 months ago
2
The shape size for the kmer_hash.
#3242
JappyPing
closed
8 months ago
3
[MISC] gcc 14 workaorund
#3241
eseiler
closed
9 months ago
2
[FIX] CPP23
#3240
eseiler
closed
9 months ago
2
single-thread mode
#3239
notestaff
opened
9 months ago
4
doc,fix: variable bgzf_thread_count is no longer static
#3238
SGSSGene
closed
9 months ago
2
small documentation error
#3237
notestaff
closed
9 months ago
2
sam tags functions
#3236
notestaff
closed
6 months ago
4
creating SAM file headers
#3235
notestaff
opened
9 months ago
1
[DOC] Improve version selector
#3234
eseiler
closed
9 months ago
2
[INFRA] Check markdown files for doxygen
#3233
eseiler
closed
9 months ago
2
Bump codecov/codecov-action from 3 to 4
#3232
dependabot[bot]
closed
9 months ago
3
[FIX] Documentation
#3231
eseiler
closed
9 months ago
2
[INFRA] Rename master to main
#3230
eseiler
closed
9 months ago
2
Patch/copyrightyear update
#3229
SGSSGene
closed
9 months ago
3
Bump peter-evans/create-or-update-comment from 3 to 4
#3228
dependabot[bot]
closed
9 months ago
2
FEATURE: add seqan3::default_printer
#3227
marehr
closed
3 months ago
5
[INFRA] Update documentation directory
#3226
eseiler
closed
10 months ago
1
[INFRA] Add IntelLLVM CI
#3225
eseiler
closed
9 months ago
2
Bump actions/cache from 3 to 4
#3224
dependabot[bot]
closed
10 months ago
2
[INFRA] Bump minimal CMake version
#3223
eseiler
closed
10 months ago
2
fix: workaround compiling with debug mode
#3222
SGSSGene
closed
10 months ago
4
compiling with _GLIBCXX_DEBUG gives errors
#3221
notestaff
closed
10 months ago
4
Question about large alphabet set
#3220
abde-ali-kagalwalla
closed
10 months ago
3
Bump actions/upload-artifact from 3 to 4
#3219
dependabot[bot]
closed
11 months ago
2
Convert vertor<dna5> to std:string
#3218
nhhaidee
opened
11 months ago
1
Bump actions/setup-python from 4 to 5
#3217
dependabot[bot]
closed
11 months ago
2
[DOC] multiple use of section label
#3216
eseiler
closed
11 months ago
2
Unsupported SAM header tag in @HD: pb
#3215
notestaff
closed
8 months ago
6
[FIX] Disable SeqAn2 OpenMP benchmark on clang
#3214
eseiler
closed
1 year ago
2
[INFRA] Add macOS libc++ CI
#3213
eseiler
closed
1 year ago
2
[FIX] libc++: snippet tests
#3212
eseiler
closed
1 year ago
2
[FIX] libc++: performance tests
#3211
eseiler
closed
1 year ago
2
[FIX] libc++: header tests
#3210
eseiler
closed
1 year ago
2
[FEATURE] libc++ support
#3209
eseiler
closed
1 year ago
2
[FIX] std::result_of_t
#3208
eseiler
closed
1 year ago
2
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