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sims-lab
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CapCruncher
Analysis tool for NG-Capture-C, Tri-C and Tiled-C data
https://sims-lab.github.io/CapCruncher/
GNU General Public License v3.0
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build(deps): Update pydantic requirement from <2.5.0,>2.4.0 to >2.4.0,<2.6.0
#248
dependabot[bot]
closed
10 months ago
1
build(deps): Update pyranges requirement from <=0.0.127 to <=0.0.129
#247
dependabot[bot]
closed
10 months ago
1
build(deps): Update polars requirement from <=0.19.15 to <=0.19.19
#246
dependabot[bot]
closed
10 months ago
2
build(deps): Update ujson requirement from <=5.7.0 to <=5.8.0
#245
dependabot[bot]
opened
10 months ago
2
fix(build): correct pydantic vs ray conflict
#244
alsmith151
closed
9 months ago
0
fix(ucsc-hub): Correct errors when generating the "Replicates" composite track
#243
alsmith151
closed
10 months ago
1
fix(pipeline): Use recursion to format config dictionary
#242
alsmith151
closed
10 months ago
1
Add ray-default dependency
#241
alsmith151
closed
10 months ago
0
chore(deps): pinned polars
#240
alsmith151
closed
10 months ago
1
fix(pipeline): using fastqc snakemake wrapper
#239
alsmith151
closed
10 months ago
1
feat(pipeline): plotting logs moved
#238
alsmith151
closed
10 months ago
1
chore(deps): pyarrow, ibis, cct bumped
#237
alsmith151
closed
10 months ago
0
Reduce annotation memory usage
#236
alsmith151
closed
11 months ago
1
Feat enable aggregated track plotting
#235
alsmith151
closed
11 months ago
1
h5py TypeError '<' not supported between instances of 'str' and 'int'
#234
mtekman
opened
11 months ago
3
fix(report): Use the active kernel for report generation
#233
alsmith151
closed
11 months ago
1
fix(deduplicate-slices): Wrong Snakemake parameters supplied to script when empty input
#232
alsmith151
closed
11 months ago
1
chore: pyarrow minimum to 14.0.1
#231
alsmith151
closed
11 months ago
1
Fixes UCSC hub generated when create == no
#230
alsmith151
closed
11 months ago
1
CCTrack file_type now accepts all cb tracks
#229
alsmith151
closed
11 months ago
1
feat(utils): added make_chicago_map cli command
#228
alsmith151
closed
11 months ago
1
feat(pileup): added to_pyranges
#227
alsmith151
closed
10 months ago
1
feat(pipeline): regenerate fastq from capcruncher results
#226
alsmith151
closed
11 months ago
1
chore(CI): Run workflow on PRs
#225
alsmith151
closed
11 months ago
1
Fix to sorting on chromosomes with non-integer names (e.g. 'X')
#224
mtekman
closed
11 months ago
3
Genome digest fails on Chromosome X with --sort
#223
mtekman
closed
11 months ago
0
fix(annotation): Corrects only null values for "get" intersections
#222
alsmith151
closed
11 months ago
1
fix(alignment-filtering): filtering can now proceed beyond joining with annotations
#221
alsmith151
closed
11 months ago
1
chore(deps): increased number of pinned requirements
#220
alsmith151
closed
11 months ago
1
build(deps): Update pysam requirement from <=0.21.0,>0.15.0 to >0.15.0,<=0.22.0
#219
dependabot[bot]
closed
11 months ago
1
build(deps): Update plotly requirement from <=5.17.0,>5.0.0 to >5.0.0,<=5.18.0
#218
dependabot[bot]
closed
11 months ago
1
build(deps): Update pandas requirement from <=2.1.1 to <=2.1.2
#217
dependabot[bot]
closed
11 months ago
1
build(deps): Update pyarrow requirement from <14.0.0,>8.0.0 to >8.0.0,<15.0.0
#216
dependabot[bot]
closed
11 months ago
1
feat(annotation): Perform sequential annotation to reduce ray related slowdown
#215
alsmith151
closed
11 months ago
1
chore: merge develop with master
#214
alsmith151
closed
11 months ago
1
feat(pipeline-statistics): improve statistics
#213
alsmith151
closed
12 months ago
1
fix(pipeline): ignores viewpoint validation
#212
alsmith151
closed
1 year ago
1
build(deps): Update pandas requirement from <=2.0.1 to <=2.1.1
#211
dependabot[bot]
closed
1 year ago
1
fix: do not translate fastq names for fastqc
#210
alsmith151
closed
1 year ago
1
build(deps): Update plotly requirement from <=5.10.0,>5.0.0 to >5.0.0,<=5.17.0
#209
dependabot[bot]
closed
1 year ago
1
build(deps): Update pysam requirement from <=0.19.1,>0.15.0 to >0.15.0,<=0.21.0
#208
dependabot[bot]
closed
1 year ago
1
build(deps): Update pandas requirement from <=2.0.1 to <=2.1.0
#207
dependabot[bot]
closed
1 year ago
1
build(deps): Update snakemake requirement from <=7.30.2 to <=7.32.4
#206
dependabot[bot]
closed
1 year ago
1
build(deps): Update pyarrow requirement from <12.0.0,>8.0.0 to >8.0.0,<14.0.0
#205
dependabot[bot]
closed
1 year ago
1
fix: oom when counting
#204
alsmith151
closed
1 year ago
1
feat: add validation during pipeline run
#203
alsmith151
closed
1 year ago
1
feat: enable pileups with multiple viewpoint bins
#202
alsmith151
closed
1 year ago
1
fix: check parquet files exist before moving
#201
alsmith151
closed
1 year ago
0
fix(pipeline): corrected under counting
#200
alsmith151
closed
1 year ago
0
feat: capcruncher utilities dump cli added.
#199
alsmith151
closed
1 year ago
1
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