sizespectrum mizer issues

sizespectrum / mizer

Multi-species size-based ecological modelling in R

https://sizespectrum.org/mizer

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issues

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Issue warning when a species abundance is not negligible above its w_max

#298 gustavdelius opened 1 month ago
0
Mistake in numerical differentiation

#297 gustavdelius opened 1 month ago
0
Changing `w_max` should also change `ft_mask`

#296 gustavdelius closed 1 month ago
0
`steadySingleSpecies()` does not update `time_modified`

#295 gustavdelius closed 1 month ago
0
`summary()` should also show metadata

#294 gustavdelius opened 2 months ago
0
The output of `newCommunityParams()` changed in version 2.4.0

#293 gustavdelius closed 1 month ago
1
New species param `w_repro_max`

#292 gustavdelius closed 3 months ago
0
Make `matchGrowth()` work when `n != p`

#291 gustavdelius opened 7 months ago
0
`addSpecies()` should get `info_level` argument

#290 gustavdelius opened 7 months ago
0
External encounter rate

#289 gustavdelius closed 3 months ago
1
Using ratio by default for plotBiomassObservedVsModel...

#288 SamikDatta closed 7 months ago
14
Append argument in project function appears non-functional

#287 JamesRimmerEco closed 9 months ago
1
Other components at all time steps are always equal to final time step

#285 gustavdelius closed 10 months ago
0
Getting ready for version 2.5.0

#284 gustavdelius closed 11 months ago
0
`get_phi()` should check that it returns valid positive values

#283 gustavdelius closed 11 months ago
0
`get_h_default()` should provide default even when no growth info is available

#282 gustavdelius closed 11 months ago
0
Adapt `plotYieldObservedVsModel()` and `matchYield()` to work with multiple gears

#286 gustavdelius opened 1 year ago
0
Different resource's default values between newTraitParams() and newMultispeciesParams()

#281 baldrech opened 1 year ago
1
In `addSpecies()` only issue warning if feeding level drops below critical level

#280 gustavdelius opened 1 year ago
0
`matchGrowth()` gives error when there is no `w_inf` column

#279 gustavdelius closed 11 months ago
1
Speed up inner loop

#278 gustavdelius opened 1 year ago
0
Don't warn repeatedly when l_mat and w_mat are inconsistent

#277 gustavdelius closed 11 months ago
2
Release mizer 2.4.0

#276 gustavdelius closed 1 year ago
0
Iterative method for finding steady state

#275 gustavdelius closed 1 year ago
1
Extra parameters to model discards

#274 gustavdelius closed 7 months ago
2
Better error message when `getParams()` is not called with MizerSim object

#273 gustavdelius closed 1 year ago
0
Avoid using $ notation for species parameters with short names

#272 gustavdelius closed 1 year ago
0
Set and document default for exponents in `set...()` functions

#271 gustavdelius opened 1 year ago
0
Fix colours for species in NS_params

#270 gustavdelius closed 1 year ago
0
Comment on `w_inf` leads to error in `plyr::aaply()`

#269 gustavdelius closed 1 year ago
0
Comment field not preserved by `set_species_param_default()`

#268 gustavdelius closed 1 year ago
0
Allow `plotDiet()` to display diets of several species

#267 gustavdelius closed 2 years ago
0
Wrong species listed in the legend of `plotYieldObservedVsModel()`

#266 gustavdelius closed 2 years ago
1
ggplot2.3.4 has changed the ordering of legends in `plotDiet()`

#265 gustavdelius closed 2 years ago
0
Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0.

#264 gustavdelius closed 2 years ago
0
Deal better with column names when interaction matrix is read from .csv

#263 gustavdelius closed 2 years ago
0
The indicator functions should also work with a MizerParams object

#262 gustavdelius opened 2 years ago
0
Function for automatically adjusting `h` and `gamma` to match observed growth and feeding level

#261 gustavdelius closed 1 year ago
2
New species parameter `age_mat` for age at maturity

#260 gustavdelius closed 1 year ago
0
Distinguish between maximum size and asymptotic size

#259 gustavdelius closed 1 year ago
6
Add functions for conversion between weight and length

#258 gustavdelius closed 1 year ago
0
Allow users to specify length-based species parameters

#257 gustavdelius closed 1 year ago
1
S4 class-based extension mechanism

#256 gustavdelius opened 2 years ago
2
Better error message when `time_range` is empty

#255 gustavdelius closed 10 months ago
0
Warn if step size is too big

#254 gustavdelius opened 2 years ago
0
Incorporate modifications from mizerExperimental

#253 gustavdelius closed 11 months ago
0
`getReproductionLevel()` should make sense as long as `R_max` exists

#252 gustavdelius closed 2 years ago
0
Give useful error if `valid_species_arg()` is called only with invalid names

#251 gustavdelius closed 2 years ago
1
Allow user to specify range on axes in plots

#250 gustavdelius opened 2 years ago
0
`newTraitParams()` can produce unrealistic `erepro` values.

#249 gustavdelius opened 2 years ago
0