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slowkow
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harmonypy
🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.
https://portals.broadinstitute.org/harmony/
GNU General Public License v3.0
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Update author info
#36
johnarevalo
closed
2 months ago
0
Any plan to release 0.0.10 ?
#35
johnarevalo
closed
2 months ago
4
TypeError: 'float' object is not subscriptable
#34
bholmes-datasight
closed
3 months ago
3
Will the latest R harmony updates be propagated to the harmonypy
#33
deevdevil88
opened
7 months ago
1
Error in running large dataset
#32
zhou-1314
closed
8 months ago
2
AttributeError: 'NoneType' object has no attribute 'split'
#31
VivianQM
closed
10 months ago
5
Reference mapping option
#30
dhoanghiep
closed
1 year ago
2
sklearn.cluster.KMeans issue with kmeans_single() and threadpool_limits()
#29
shivamjgandhi
closed
1 year ago
4
Fix test for python 3.6. seed param not allowed in old kmeans2
#28
johnarevalo
closed
1 year ago
1
Add github workflow to run tests
#27
johnarevalo
closed
1 year ago
0
To add back the kmeans2 method as an alternative option for reproducibitlity
#26
hurleyLi
closed
1 year ago
1
Fix #24. Add random_state to kmeans, test added.
#25
johnarevalo
closed
1 year ago
3
Results not reproducible
#24
hurleyLi
closed
1 year ago
18
Add converged status to harmony object
#23
potulabe
closed
1 year ago
1
Unique key is not in pandas describe
#22
Arkkienkeli
closed
1 year ago
3
Build changes have broken Conda install
#21
pinin4fjords
closed
1 year ago
1
Use sklearn.cluster.KMeans for init
#20
johnarevalo
closed
1 year ago
4
Harmony with two or more covariates
#19
Sayyam-Shah
closed
2 years ago
3
Runharmony with R and run_harmony with Python produced different results
#18
zy-fang
closed
1 year ago
1
fully typed
#17
milescsmith
closed
2 years ago
1
Running multiple instances of the same variable in vars_use.
#16
FFB-Lab
closed
2 years ago
5
run harmonypy true_divide error
#15
gmoore5
closed
2 years ago
3
feature request:
#14
dangeles
closed
3 years ago
2
How to get the result after running harmony?
#13
HelloWorldLTY
closed
3 years ago
2
ValueError: operands could not be broadcast together
#12
swemeshy
closed
3 years ago
1
Feature request: plot convergence
#11
JATC1024
closed
2 years ago
1
ValueError: operands could not be broadcast together with shapes
#10
DennisPost10
closed
2 years ago
9
How to cite this work?
#9
burtonrj
closed
3 years ago
2
Improve use of max_iter_harmony + max_iter_kmeans
#8
pinin4fjords
closed
4 years ago
4
Try filprofiler
#7
slowkow
opened
4 years ago
1
Question re variance explained from harmony-corrected components
#6
kathrinjansen
closed
4 years ago
4
Harmonypy results with anndata
#5
321356766
closed
4 years ago
4
Error when trying to run Harmony with multiple covariates
#4
liboxun
closed
4 years ago
3
Failed to set number of max iterations to more than 10
#3
liboxun
closed
4 years ago
2
Merge pull request #2 from lilab-bcb/master
#2
bli25
closed
4 years ago
1
Fix break in lisi computation
#1
tariqdaouda
closed
4 years ago
1