smdabdoub kraken-biom issues

smdabdoub / kraken-biom

Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

MIT License

47 stars 16 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

ERROR: Failed building wheel for biom-format

#27 lauraelf opened 2 days ago
0
Can you add a new version tag to cite properly?

#26 azmigueldario opened 1 year ago
0
Question Regarding Read Assignments in Biom Files

#25 Tonny-zhou opened 1 year ago
0
It seems that unclassified reads are ignored

#24 claczny opened 1 year ago
1
Include taxonomic levels below species

#23 Pstege opened 1 year ago
2
New release needed

#22 bgruening opened 2 years ago
1
empty .biom files from normal-looking bracken reports?

#21 mawa86 opened 2 years ago
4
Add sample_data info to biom file

#20 Ptero64 opened 2 years ago
4
Abundance calculation question

#19 Valentin-Bio-zz closed 2 years ago
1
Bracken input error: "biom.exception.TableException: Cannot delimit self if I don't have data..."

#18 trfeuerborn opened 2 years ago
4
Errors while using kraken-biom

#17 pdhrati02 opened 2 years ago
0
Hi, is there a bracken to biom tool. I have seen this issue requested before but with no conclusion. Thx m

#16 madlam-tech opened 2 years ago
0
Updating conda and PyPI

#15 ctanes opened 2 years ago
2
add dockerfile to install options

#14 shaunchuah closed 3 years ago
1
Instructions

#13 rebeelouise closed 3 years ago
5
biom file not working with Phinch

#12 LeonardosMageiros closed 3 years ago
3
Add metadata to biom table

#11 casperp closed 3 years ago
0
kraken2?

#10 raw937 opened 6 years ago
21
Fix taxonomy parsing

#9 ressy closed 6 years ago
1
it will be great to share the testing examples

#8 gc26762524 closed 4 years ago
1
Only keep one taxonomic rank

#7 maxibor closed 6 years ago
1
Option to take folder with kraken reports

#6 eclarke closed 6 years ago
1
Compatibility with krakenhll

#5 fconstancias opened 6 years ago
1
Taxonomic hierarchy incorrect for certain cases

#4 ressy closed 6 years ago
8
Setting --max and --min to the same level causes an error.

#3 smdabdoub closed 6 years ago
1
compatibility with bracken

#2 ajaybabu27 closed 7 years ago
5
Update documentation to reflect executable name change

#1 smdabdoub closed 6 years ago
1