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snakemake-workflows
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rna-seq-kallisto-sleuth
A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
MIT License
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option for custom genome
#131
arunprasanna83
closed
3 days ago
1
perf: Increase ensembl release version to 113
#130
fxwiegand
opened
5 days ago
1
chore(main): release 2.8.3
#129
github-actions[bot]
opened
5 days ago
1
Error in rule diffexp_datavzrd
#128
fangpingmu
closed
5 days ago
4
Unable to download requested sequence data from Ensembl
#127
fangpingmu
opened
6 days ago
1
fix: Update to latest datavzrd wrapper
#126
fxwiegand
closed
5 days ago
1
perf: Update to latest datavzrd wrapper
#125
fxwiegand
closed
3 weeks ago
1
fix: Move NA values to end of table
#124
fxwiegand
closed
3 weeks ago
1
fix: Convert pval and qval to heatmap
#123
fxwiegand
closed
3 weeks ago
2
fix: Update max in memory rows for diffexp report
#122
fxwiegand
closed
3 weeks ago
1
chore(main): release 2.8.2
#121
github-actions[bot]
closed
3 weeks ago
2
perf: Update to latest datavzrd wrapper version
#120
fxwiegand
closed
1 month ago
1
chore(main): release 2.8.1
#119
github-actions[bot]
closed
1 month ago
1
perf: Update datavzrd wrapper version
#118
fxwiegand
closed
1 month ago
0
fix: Move signed_pi_value columns to the end (again)
#117
Addimator
closed
1 month ago
0
chore(main): release 2.8.0
#116
github-actions[bot]
closed
1 month ago
1
feat: sort datavzrd tables
#115
Addimator
closed
1 month ago
0
refactor: Refactor meta comparison
#114
fxwiegand
closed
1 month ago
0
fix: Fix meta comparison and wildcard issue
#113
fxwiegand
closed
2 months ago
2
chore(main): release 2.7.2
#112
github-actions[bot]
closed
1 month ago
1
fix: Fix meta comparison model and label path
#111
fxwiegand
closed
2 months ago
0
fix: Move signed_pi_value_* columns into detail mode that dont include the primary variable
#110
fxwiegand
closed
2 months ago
0
fix: Update datavzrd wrapper version
#109
fxwiegand
closed
2 months ago
0
chore(main): release 2.7.1
#108
github-actions[bot]
closed
2 months ago
1
fix: Remove IHW outputs from report
#107
fxwiegand
closed
2 months ago
1
fix: Move signed_pi_value_* columns to the end and move non primary variable columns to detail mode
#106
fxwiegand
closed
2 months ago
0
fix: Handle missing bam columns in units.tsv
#105
fxwiegand
closed
3 months ago
5
docs: Fix units configuration docs for bam files
#104
fxwiegand
closed
3 months ago
5
fix: Fix missing output in spia.R when no significant genes are found
#103
fxwiegand
closed
4 months ago
0
fix: Remove non-existent outputs in spia rule
#102
fxwiegand
closed
4 months ago
0
docs: improve base_level explanation in config.yaml files
#101
dlaehnemann
closed
4 months ago
0
perf: Update samtools fast separate wrapper
#100
fxwiegand
closed
4 months ago
0
docs: improve configs and configuration README.md
#99
dlaehnemann
closed
4 months ago
0
perf: Update datavzrd wrapper
#98
fxwiegand
closed
4 months ago
0
chore(main): release 2.7.0
#97
github-actions[bot]
closed
2 months ago
1
chore(main): release 2.6.0
#96
github-actions[bot]
closed
5 months ago
1
ci: Add fetch-depth: 0 to linting job
#95
fxwiegand
closed
5 months ago
0
feat: Allow bam input files
#94
fxwiegand
closed
5 months ago
0
feat: Improve datavzrd tables
#93
Addimator
closed
2 months ago
3
perf: datavzrd wrapper `v3.12.1`, offer-excel configurable, free disk space for CI, dynamic sleuth_init mem_mb, pure download rules as localrules
#92
dlaehnemann
closed
5 months ago
2
perf: update datavzrd wrapper to 3.8.0
#91
dlaehnemann
closed
5 months ago
0
chore: update datavzrd to latest version v3.5.2
#90
dlaehnemann
closed
7 months ago
0
chore: update bioconductor-biomart to 2.58
#89
dlaehnemann
closed
4 months ago
0
chore(main): release 2.5.4
#88
github-actions[bot]
closed
9 months ago
1
chore(main): release 2.5.3
#87
github-actions[bot]
closed
9 months ago
1
fix: add more logging statemens to `sleuth-diffexp.R`, add QuantSeq testing data to get QuantSeq tests to pass
#86
dlaehnemann
closed
9 months ago
1
Libcrypto.so.1.1 not available?
#85
him1532
closed
9 months ago
5
cutadapt not available?
#84
him1532
closed
11 months ago
3
perf: improve spia script and report
#83
dlaehnemann
closed
9 months ago
0
Error in rule diffexp_datavzrd
#82
aFienemann
opened
1 year ago
1
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