soedinglab hh-suite issues

soedinglab / hh-suite

Remote protein homology detection suite.

https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-3019-7

GNU General Public License v3.0

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issues

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Neff value range

#224 UriNeri opened 4 years ago
0
uniboost entries look very strange

#223 yangkky opened 4 years ago
2
test result variance on a big endian (s390x) system

#222 mr-c opened 4 years ago
1
Excessive LINELEN size results in stack overflows on macOS

#221 milot-mirdita opened 4 years ago
0
test script without MPI?

#220 mr-c closed 4 years ago
3
Enable optional executable suffix to indicate SIMD level

#219 mr-c closed 4 years ago
5
mkdssp error in hhblits

#218 yusufzaferaydin opened 4 years ago
3
Please update embedded copy of ffindex to v0.9.9.9 from v0.9.8.0

#217 mr-c opened 4 years ago
4
Uniclust90 sequence database

#216 yusufzaferaydin opened 4 years ago
0
HHblits output different with MSA output

#215 CryoSky opened 4 years ago
0
build database using protein sequences?

#214 gancao opened 4 years ago
1
What does hhfilter exactly do ?

#213 TaoDFang opened 4 years ago
0
Fastest way to run HHblits on many different sequences?

#212 tueboesen closed 4 years ago
13
Not really an issue but when will the next Pfam DB download be available?

#211 DLMURPHY150 opened 4 years ago
1
HHBLITS throughs segmentation fault

#210 satwika007 opened 4 years ago
2
secondary structure prediction by addss.pl

#209 Rippei opened 4 years ago
2
error in addss.pl

#208 acpguedes opened 4 years ago
1
hh-suite 3.2.0 release programs output wrong version number

#207 smg3d closed 4 years ago
1
hhblits : some values (No_of_seqs & Neff) are wrong with some combination of parameters

#206 smg3d opened 4 years ago
0
Consistent worse contact accuracy resulted from hhblits3

#205 kad-ecoli closed 4 years ago
15
custom database creation error on ctranslate step

#204 nick-youngblut opened 4 years ago
4
UniRef30_2020_03_hhm.ffdata cannot be unpacked.

#203 sarahshah closed 4 years ago
2
ERROR: Input file (data/sample) could not be opened!

#202 SLS79 closed 4 years ago
1
align many unrelated sequences

#201 RamilNurtdinov opened 4 years ago
1
Hi. I have seen other people having a similar issue previously, however I cannot solve my problem using the information found online.

#200 bluestreek2507 closed 4 years ago
0
Problem HHSuite - Segmentation fault

#199 dcerdanv closed 4 years ago
2
conda hhsuite returns different results after every run

#198 bognabognabogna opened 4 years ago
12
Error at compilation with MPI

#197 gabrielctn closed 4 years ago
3
AA scoring matrix indexing error in FullAlignment::Build detected by Clang sanitizer

#196 dvs closed 4 years ago
2
Memory sanitizer issues

#195 dvs closed 4 years ago
7
hhviterbialgorithm.cpp - fix ss_score_vec indexing

#194 dvs closed 4 years ago
3
Segmentation faults and wrong hits from HHblits due to indexing error in ss_score

#193 dvs closed 4 years ago
1
Most recent (2020) Uniclust30 db potential formatting error.

#192 limitloss closed 4 years ago
2
Fixing Altivec Splat Bug

#190 jhuber6 closed 4 years ago
6
Fixing SIMD bitshift errors on PowerPC

#189 jhuber6 closed 4 years ago
0
coverting cs219 file in uniclust

#188 kad-ecoli closed 4 years ago
5
simple test for functionality?

#187 asedova opened 4 years ago
48
IBM-HPC support missing again

#186 kWeissenow closed 4 years ago
7
prefilter in hhblits takes hours

#185 patrickbryant1 closed 4 years ago
3
Error while creating an MSA for custom database creation

#184 hites77 opened 4 years ago
2
reformat.pl transformed alignment in different length

#183 lllovej closed 4 years ago
2
A fix for HHfilter

#182 huhlim closed 4 years ago
1
hhblits3 memory leak

#181 kad-ecoli closed 4 years ago
1
ERROR: Could not read index file...

#180 nkuhuangyan opened 4 years ago
2
-- Performing Test HAVE_AVX2_EXTENSIONS - Failed -- Performing Test HAVE_AVX_EXTENSIONS -- Performing Test HAVE_AVX_EXTENSIONS - Failed

#179 YanpingHu closed 4 years ago
1
Parsed hhr file has different name with a3m file

#178 CryoSky opened 4 years ago
1
hhpred fails to create directory in /tmp

#177 smped closed 4 years ago
3
Hh-search does not work on *.pal files

#176 goaaron closed 4 years ago
2
addss.pl :: blastpgp failure due to incorrect input file name

#175 EricDeveaud opened 4 years ago
1
no local alignment by hhalign

#174 rattei closed 4 years ago
2

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