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soedinglab
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hh-suite
Remote protein homology detection suite.
https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-3019-7
GNU General Public License v3.0
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Compilation error from source
#274
ajrferrari
closed
3 years ago
2
build custom database
#273
hartrials
closed
3 years ago
4
fail to get MSA
#272
wtzhao1631
opened
3 years ago
0
unzip error for uniclust30_2018_08_hhsuite.tar.gz
#271
wtzhao1631
closed
2 years ago
1
issues about annotation
#270
mujiezhang
closed
3 years ago
0
compile error in macos BigSur 11.2.3
#269
2efPer
closed
3 years ago
2
issue about building local databse
#268
mujiezhang
opened
3 years ago
27
[Suggestion] Change the Wiki's recommendation for multi-domain proteins
#267
apcamargo
opened
3 years ago
2
Is it possible to reconstruct .a3m with .hhm
#266
xptree
closed
3 years ago
2
Fix buffer overflow in ffindex_from_fasta
#265
konstin
opened
3 years ago
3
Segmentation fault (core dumped) when ffindex_from_fasta
#264
zhaoxvwahaha
opened
3 years ago
5
hhblits crashes if a sequence id is longer than 31 characters
#263
konstin
opened
3 years ago
3
segmentation fault in 'ffindex_from_fasta' when indexing very long proteins
#262
apcamargo
opened
3 years ago
11
Executing hhmake using FASTA/A3M alignments generate distinct profiles
#261
apcamargo
opened
3 years ago
0
Segmentation Fault with hhblits customized database example
#260
konstin
opened
3 years ago
6
no bin directory generated when compile from source code
#259
zhaoxvwahaha
opened
3 years ago
1
the query is multiple different sequence
#258
zhaoxvwahaha
opened
3 years ago
1
Pairwise MSA with hhalign
#257
LeonardoMorenoG
closed
3 years ago
3
Command line to align two MSAs
#256
rcedgar
opened
3 years ago
5
hhalign vs hhsearch
#255
ksteczk
opened
3 years ago
2
commands for splitfasta.pl do not work on conda installs
#254
paulaberry
opened
3 years ago
2
HHblits process killed
#253
sgorman90
opened
3 years ago
5
[hhmake] -add_cons results in seq fault
#252
ksteczk
closed
3 years ago
3
BFD a3m issue
#251
mhj112358
closed
3 years ago
2
Role of cstranslate in building a custom database?
#250
spetti
opened
3 years ago
1
hhsearch Segmentation Fault
#249
ckallu
closed
3 years ago
2
Can I use hh-suite in natural language processing scenario?
#248
thuxugang
closed
3 years ago
2
addss.pl errors
#247
ksteczk
closed
3 years ago
1
hh_reader.py. Copy-pasta error for processing template length
#246
chrismacdermaid
opened
3 years ago
0
build problems on ppce with new version
#245
asedova
opened
3 years ago
3
fix: accept over 127 parameters
#244
zacharyrs
closed
3 years ago
2
Number of parameters is limited to 127
#243
zacharyrs
closed
3 years ago
0
Conda installation of hhsuite not working
#242
luederm
closed
3 years ago
2
HHPRED databases should be an environmental variable by default
#241
jshleap
opened
3 years ago
1
Fix minor bug in hh-suite/scripts/hh_reader.py
#240
zhujianwei31415
closed
3 years ago
1
Minor bug in "hh-suite/scripts/hh_reader.py"
#239
zhujianwei31415
closed
3 years ago
0
memory usage of hhblits_omp
#238
rujpeng
opened
3 years ago
8
upgrade to SIMDe 0.7.0
#237
mr-c
closed
3 years ago
0
cif2fasta.py (3.2.0) incorrectly generate protein description when cif file contain multiple fasta
#236
igortru
opened
3 years ago
5
hhpred is looking for a file that is not in the database
#235
Barak19
opened
3 years ago
5
hh_reader.py giving TypeError
#234
Stochastic13
opened
3 years ago
3
Trouble creating database cs219 files.
#233
Mingchenchen
opened
3 years ago
1
name of target hit didn't show up in -blasttab output
#232
jhpanda
closed
3 years ago
1
PDB70 archive
#231
mhj112358
closed
3 years ago
5
'-p' and '-E' parameters not working as expected
#230
apcamargo
opened
3 years ago
0
NCBI_CD TIGRFAM database
#229
LiuyangZHAO2020
opened
3 years ago
1
Clarification about running hhblits on a cluster against UniRef30_2020_02 database
#228
gauravdiwan89
closed
3 years ago
2
About the evalue
#227
DaMaoShan
opened
3 years ago
0
PDB70 license
#226
Augustin-Zidek
closed
3 years ago
5
Problems with creating a database starting with sequences
#225
hrp1000
opened
3 years ago
3
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