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soedinglab
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hh-suite
Remote protein homology detection suite.
https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-3019-7
GNU General Public License v3.0
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hhalignment.cpp error with mkdssp version 4 output
#324
hrp1000
opened
1 year ago
1
HHFilter -diff M parameter return less sequences than M
#323
ZwormZ
opened
1 year ago
0
Breaks on the armv7 architecture: error: no member named 'neon_f64' in 'simde__m128d_private'
#322
yurivict
opened
1 year ago
4
change entry name in custom database
#321
Fede112
closed
1 year ago
1
consult source code about AVX512
#320
Zjq9409
opened
1 year ago
0
hhsuite fails in generating ffdata/ffindex files for AF2-templates usage
#319
davidesala
closed
1 year ago
0
HHblits with FFindexDatabase error
#318
Lsz-20
opened
1 year ago
7
hhblits seg fault on using custom database build via the instructions in the mmseqs docs
#317
DanBuchan
opened
1 year ago
4
Is it currently supported to read database in ceph?
#316
onlyonewater
closed
1 year ago
2
hhsuite is not compatible with python 3.10
#315
tonydavis629
opened
2 years ago
4
running hhblist for 7000 sequences - memory leak?
#314
ksteczk
opened
2 years ago
0
Fix token index of template length in hh_reader.py
#313
luoyunan
opened
2 years ago
0
hhblits crashing with Error did not find 548 match states in sequence
#312
jkosinski
closed
2 years ago
1
Fix typo
#311
yarisvt
closed
2 years ago
0
hhsuitedb.py Error: No a3m database found!
#310
antoineszatkownik
opened
2 years ago
1
Does anyone know that wheather there is some difference between MSAs generated multiple times for the same sequence
#309
SilenceZZZZZZ
opened
2 years ago
0
wrong consensus sequence from hhmake
#308
antoineszatkownik
opened
2 years ago
0
Use std::sort instead of QSortInt
#307
fuji8
opened
2 years ago
4
Is the standalone ncbi CD database available for hhblits/hhsearch or are there instructions somewhere on how to make it?
#306
dxter-zz
closed
2 years ago
0
Query about hhalign
#305
hrp1000
opened
2 years ago
3
alphafold2: HHblits failed
#304
nick-youngblut
opened
2 years ago
1
Database pdb.hhm not availabe
#303
SarahSubsurface
opened
2 years ago
0
alignment file error
#302
sanaamir119
opened
2 years ago
1
Compress BFD database
#301
heeqee
opened
2 years ago
4
Building a custom PDB sequence database for Hhblit
#300
sizeineb
opened
2 years ago
0
Running hhblits with the same inputs twice yields different a3m alignments
#299
tanhevg
opened
2 years ago
1
Incosistent behavior of `hhconsensus -M X`?
#298
alephreish
opened
2 years ago
0
reformat.pl puts #=GC at top, should be at bottom
#297
dstern
opened
2 years ago
0
hhsuitedb.py generates empty cs219 files
#296
shaharbr
opened
2 years ago
0
Numbers of lines in blast-tab output and MSA file doesn't match
#295
elevywis
opened
2 years ago
0
FFindex Trademark notification
#294
ahcm
opened
2 years ago
0
Segmentation fault when running hhblits against custom database [fixed]
#293
almutwerner
opened
2 years ago
0
Add exception class to handle case where field in struct is not present
#292
balvisio
opened
2 years ago
0
hhblits segmentation fault
#291
xinyu-g
closed
2 years ago
3
hhsearch can not open file 'pdb70/pdb70_cs219.ffdata'
#290
XiaoTigerHAO
closed
2 years ago
2
Problem of hhsuite run time
#289
NikoBelice
closed
2 years ago
4
build customized databases
#288
Wanli-HE
opened
2 years ago
1
scripts/pdbfilter.py does not filter out the same protein for some cases.
#287
huhlim
opened
2 years ago
0
build a custom db for HHblits
#286
Ahmedroumia
closed
2 years ago
2
"sequence ss_pred contains no residues."when running hhsearch
#285
Meowooo
opened
2 years ago
1
Extract full sequence in database of HHblits hits
#284
realtman
opened
2 years ago
2
How to build cs219 databases faster?
#283
sunzhig
opened
2 years ago
0
Illegal instruction running on AMD, compiled on INTEL
#282
chrisroat
closed
2 years ago
2
split database for the storage random access limitation problem
#281
baoxingsong
opened
2 years ago
3
c++: fatal error: Killed signal terminated program cc1plus
#280
paulgarias
closed
2 years ago
8
Runtime Error: Hbblits failed
#279
levipierce
closed
2 years ago
6
[HHblits] The output first sequence length(32763) is not equal to query sequence length(34350)
#278
Licko0909
closed
2 years ago
1
hhalignment: did not find [x] match states in sequence [i]
#277
johnlees
opened
2 years ago
30
reformat.pl missing #=GF DE *descriptor* during conversion from a3m to stockholm format
#276
kylemeador
closed
2 years ago
3
hhsearch segmentation fault
#275
ajrferrari
closed
2 years ago
12
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