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stemangiola
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tidySingleCellExperiment
Brings SingleCellExperiment objects to the tidyverse
https://stemangiola.github.io/tidySingleCellExperiment/index.html
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aggregate_cells takes too long
#110
MaximilianNuber
opened
3 days ago
1
Path of images of stemangiola.github.io/tidySingleCellExperimen not correct
#109
corinabioinformatic
opened
1 week ago
0
[feature request] use cli printing
#108
stemangiola
opened
1 month ago
0
feature request: join_features shape="long" should carry the rowData as well, similarly to `tidySummarizedExperiment`
#107
stemangiola
opened
1 month ago
0
update nest to use cell numeric id rather than original id which can …
#106
stemangiola
closed
1 month ago
0
R dependency
#105
stemangiola
closed
1 month ago
0
Fix aggregate with rowdata
#104
stemangiola
closed
1 month ago
0
Issue 9 colore view only
#103
qclayssen
opened
5 months ago
0
fix-biocCHECK
#102
stemangiola
closed
6 months ago
0
Improve `plot_ly`
#100
william-hutchison
closed
8 months ago
0
Refactor *_join functions with function factory
#99
lambdamoses
closed
8 months ago
1
Allow y as S4 DataFrame in *_join()
#98
lambdamoses
closed
8 months ago
5
group_split
#97
B0ydT
closed
6 months ago
10
Improve plot_ly
#96
william-hutchison
closed
8 months ago
9
Clarifications about `.abundance_counts`
#95
denvercal1234GitHub
opened
9 months ago
4
Improve documentation
#94
william-hutchison
closed
9 months ago
0
Inconsistency between assay data used and what is advised in SingleR?
#93
denvercal1234GitHub
closed
9 months ago
10
Error from plotting `sce` object: '.abundance_counts' not found
#92
denvercal1234GitHub
closed
9 months ago
9
Clarification of getting back/disabling the viewing of sce as tibble?
#91
denvercal1234GitHub
closed
9 months ago
2
Add slice functions
#90
noriakis
closed
10 months ago
3
Add conditional print method for objects that contain alternative experiments
#89
Biomiha
opened
10 months ago
37
`tidySCE`: `slice` masks tidyverse::slice
#88
stemangiola
opened
10 months ago
0
add argument to aggregate_cells
#87
stemangiola
closed
10 months ago
0
Speedup aggregate cells
#86
stemangiola
closed
10 months ago
0
Tweak print method to show altExpNames
#85
Biomiha
closed
10 months ago
0
`tidySCE` Speedup aggregate_cells
#84
stemangiola
closed
10 months ago
2
cleaning `BiocCheck()`; linting revision; GHA bump to Bioc devel
#83
HelenaLC
closed
10 months ago
0
`tidySCE` deal with missing assay names
#82
stemangiola
opened
10 months ago
0
`tidySCE` Functionality to see and access the altExp slot
#81
Biomiha
opened
10 months ago
18
Method for S4 DataFrame for left_join
#80
lambdamoses
closed
8 months ago
17
revise unit tests `tidySingleCellExperiment`
#79
HelenaLC
closed
10 months ago
9
update README and Vignette
#78
stemangiola
closed
11 months ago
0
+@name tags; +missing doc for inner_join
#77
HelenaLC
closed
11 months ago
3
add @name back
#76
stemangiola
closed
11 months ago
3
doc revision
#75
HelenaLC
closed
11 months ago
1
method documentation & vignette revision
#74
HelenaLC
closed
11 months ago
9
prettifying vignette revision (formatting, hyperlinks etc.)
#73
HelenaLC
closed
11 months ago
5
Implement `group_by` and `with_groups` for `tidySingleCellExperiment` and `tidyseurat`
#71
stemangiola
opened
11 months ago
15
Speed up `nest` and `unnest` for massive datasets in `tidySingleCellExperiment`
#70
stemangiola
opened
11 months ago
3
drop exports
#69
stemangiola
closed
11 months ago
1
Drop bind generics
#68
stemangiola
closed
1 year ago
0
Add `summarize` as an explicit alias of the function `summarise`
#67
william-hutchison
closed
1 year ago
3
speed up as_tibble in case I have nested columns in the metadata e.g. TCR
#66
stemangiola
opened
1 year ago
0
add join_by function from dplyr
#65
stemangiola
closed
10 months ago
0
Use generic aggregate cells from ttservice
#64
william-hutchison
closed
1 year ago
0
adapt aggregate_features() to tidyseurat which is based on ttservice
#63
stemangiola
closed
1 year ago
3
Consider adding summarize.SingleCellExperiment as an explicit alias of summarise.SingleCellExperiment
#62
keyes-timothy
closed
1 year ago
1
Repo website link is broken
#61
multimeric
closed
1 year ago
3
Bug when using `joinFeatures` + `SingleCellExperiment` with 1 cell
#60
multimeric
opened
1 year ago
1
Added aggregate cells function to README and vignette
#59
william-hutchison
closed
1 year ago
2
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