suchestoncampbelllab gwasurvivr issues

suchestoncampbelllab / gwasurvivr

GWAS Survival Package in R

11 stars 12 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Error

#37 gradsmjin814 opened 2 months ago
0
MAF snps_removed is wrong

#36 sheshen22 opened 8 months ago
2
Hadiss debug

#35 aarizvi opened 9 months ago
0
Allowing for interval survival time

#34 emiuga opened 11 months ago
1
Create coxParam_intime.R

#33 emiuga closed 11 months ago
0
empty output file for SNP*covariate interaction

#32 damichalek opened 1 year ago
3
Including 'cluster' in the coxph call

#31 lucavd opened 1 year ago
1
The reference of the HR

#30 Ninjahelicopter opened 1 year ago
5
Error in rowMeans2(genotypes, na.rm = TRUE) : Argument 'dim.' must be an integer vector of length two.

#29 shishirdube99 closed 1 year ago
2
Devel

#28 aarizvi opened 1 year ago
0
Error in plinkCoxSurv - could not find function "coxph.fit"

#27 zhaiting closed 1 year ago
12
Error in genotypes[!blankSNPs, cox.params$ids] : subscript out of bounds

#26 lucavd closed 1 year ago
1
number of SNPs analyzed in total is blank at the end of analysis

#25 tesselgalesloot opened 1 year ago
4
Error in genotypes[!blankSNPs, cox.params$ids] : subscript out of bounds

#24 DC-Zhao-yu closed 1 year ago
0
On which allele the HR is calculated, depending on the flip.dosage option?

#23 antgiord opened 2 years ago
3
question about "low variance"

#22 DrGojiMori opened 3 years ago
1
input format for gwasurvivr

#21 mightyphil2000 closed 1 year ago
1
No covariates and effect allele documentation

#20 aarizvi opened 3 years ago
3
Error in genotypes[!blankSNPs, cox.params$ids] : subscript out of bounds

#19 yard2357 opened 3 years ago
4
Flip dosage

#18 LivUllmann closed 1 year ago
1
Devel

#17 aarizvi closed 3 years ago
0
Prerefactortest

#16 MarkPlatts closed 3 years ago
0
question about chunk.size

#15 cz354 closed 3 years ago
4
Add unit tests prior and refactored code with object oriented design

#14 MarkPlatts closed 3 years ago
2
Add unit tests prior to refactoring into classes

#13 MarkPlatts closed 3 years ago
1
Error in open.TabixFile(vcf) : 'indexname' must be character(1)

#12 pmk2020 closed 1 year ago
1
Regarding to a function for PH assumption test and interpretation for resulting files

#11 kateishim opened 4 years ago
0
Error in if (nrow(genotypes) > 0) { : argument is of length zero

#10 kateishim closed 4 years ago
2
sangerCoxSurv fails in tutorial

#9 hhg7 closed 4 years ago
2
Can we use multiple IDs?

#8 Qiaolan closed 4 years ago
3
gwasurvivr and R "survival" package give different results

#7 Qiaolan closed 4 years ago
3
Error in rnorm(nrow(cox.params$pheno.file)) : invalid arguments

#6 Marie-McM opened 4 years ago
12
Error in snpgdsBED2GDS(bed.file, fam.file, bim.file, gdsfile, cvt.chr = "int",

#5 hamishinnes closed 4 years ago
2
Error in genotypes[!blankSNPs, cox.params$ids] : subscript out of bounds

#4 hamishinnes closed 4 years ago
15
Add check for NA

#3 karaesmen closed 6 years ago
0
interaction doesn't work

#2 karaesmen closed 6 years ago
1
Final

#1 karaesmen closed 6 years ago
0