issues
search
sybila
/
eBCSgen
eBCSgen - BioChemical Space Language support tool.
https://ebcsgen.readthedocs.io/
MIT License
2
stars
3
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Parsing improvements - merge `improve-parsing` into `master`
#114
mopichalova
closed
2 months ago
0
Fix tests
#113
xtrojak
closed
2 months ago
0
Further parsing improvements
#112
xtrojak
opened
2 months ago
0
Fix CI
#111
xtrojak
closed
2 months ago
0
Use observables in model
#110
xtrojak
opened
2 months ago
0
Observables
#109
mopichalova
closed
2 months ago
1
define observables
#108
mopichalova
closed
2 months ago
3
replication rules
#107
mopichalova
closed
2 months ago
0
replication rules
#106
mopichalova
closed
2 months ago
2
unique atomic agents
#105
mopichalova
closed
3 months ago
0
error raised when alias in rule is not defined
#104
mopichalova
closed
3 months ago
0
raise error when an undefined complex alias is used in a rule
#103
xtrojak
closed
3 months ago
0
structure agent can contain only unique atomic agents (w.r.t. names) in its composition
#102
xtrojak
closed
3 months ago
0
Create more comprehensive tests for regulatins
#101
xtrojak
opened
4 months ago
0
Robust rate expressions
#100
mopichalova
closed
4 months ago
3
Reverting to BCSL Original Syntax: Implementing "::"
#99
mopichalova
closed
4 months ago
2
Zooming in abstract syntax to original BCSL syntax
#98
mopichalova
closed
4 months ago
0
Rule labels in regulations and regular regulations
#97
mopichalova
closed
4 months ago
4
Bidirectional rules
#96
mopichalova
closed
4 months ago
6
Check that rule labels used in regulations do actually exist
#95
xtrojak
closed
4 months ago
0
Improve grammar syntax
#94
mopichalova
closed
4 months ago
0
Syntactic grammar improvements
#93
mopichalova
closed
4 months ago
2
enable direct usage of complexes
#92
mopichalova
closed
4 months ago
0
Insert parsing logic improved
#91
mopichalova
closed
5 months ago
1
80 testing objects
#90
mopichalova
closed
6 months ago
1
Use complexes directly in `abstract_sequence`
#89
xtrojak
closed
4 months ago
2
Regular regulation - enable only regular expressions over rule labels
#88
xtrojak
closed
4 months ago
0
Allow more robust rate expressions
#87
xtrojak
closed
4 months ago
0
Investigate content of Result.data in parsing tests
#86
xtrojak
opened
7 months ago
0
79 core tests
#85
mopichalova
closed
7 months ago
1
Interactive editor within Galaxy
#84
xtrojak
opened
1 year ago
0
Galaxy visualisations
#83
xtrojak
opened
1 year ago
0
Create Galaxy training
#82
xtrojak
opened
1 year ago
0
Register to bio.tools
#81
xtrojak
opened
1 year ago
0
Testing: Clean up creation of objects
#80
xtrojak
closed
2 months ago
3
Write tests for all other classes that are omitted for now
#79
xtrojak
closed
7 months ago
0
Extracting parsing tests
#78
mopichalova
closed
1 year ago
0
Created requirements.txt file
#77
xtrojak
closed
1 year ago
0
create `requirements.txt` file
#76
xtrojak
closed
1 year ago
0
Separate all parsing tests to a separate file/folder
#75
xtrojak
closed
1 year ago
0
Added tests for replacing abstract syntax
#74
xtrojak
closed
1 year ago
0
not supported by macos
#73
xtrojak
opened
1 year ago
1
`insert_atomic_to_complex` and `insert_struct_to_complex` do not check if the replaced agent is unspecified (i.e. atomic has `'_'` feature and structure has no atomics specified)
#72
xtrojak
closed
5 months ago
1
Write tests targeting parsing issues
#71
xtrojak
closed
2 months ago
0
Parsing improvements
#70
xtrojak
closed
2 months ago
0
Update GitHub workflows
#69
xtrojak
closed
2 months ago
1
Remove read() from PCTL processing output
#68
xtrojak
opened
1 year ago
0
Static analysis: rule redundancy elimination does not reflect rule labels
#67
xtrojak
opened
1 year ago
0
Remove obsolete Galaxy contents
#66
xtrojak
opened
1 year ago
0
PCTL synthesis output to CSV
#65
xtrojak
closed
1 year ago
0
Next