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risk-networks
Code for risk networks: a blend of compartmental models, graphs, data assimilation and semi-supervised learning
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Refactor ContactSimulator / KineticModel / MasterEquationEnsembleModel interaction
#50
glwagner
closed
4 years ago
1
Set initial fraction of active edges to equilibrium solution
#49
glwagner
closed
4 years ago
1
Use rate parameter in rate diagram to set transmission rates in KineticModel
#48
glwagner
closed
4 years ago
0
README is out of date
#47
glwagner
closed
4 years ago
1
Small nondeterminism in the EoN
#46
odunbar
closed
4 years ago
1
Test that trivial calls to `KineticModel.simulate` do not change node status
#45
glwagner
opened
4 years ago
0
WIP: Kinetic model new interface
#44
odunbar
closed
4 years ago
1
NYC data and network fix
#43
lubo93
closed
4 years ago
5
Spruces up parallel contact simulators example
#42
glwagner
closed
4 years ago
0
Add example showing how to simulate contacts in blocks
#41
glwagner
closed
4 years ago
0
Curious statements x_t = x_t and cov = cov in ensemble_adjusted_kalman_filter.py
#40
glwagner
closed
4 years ago
1
Generates clinical parameters for healthcare workers
#39
odunbar
closed
4 years ago
0
ContactSimulator for simpler time-dependent contact simulation
#38
glwagner
closed
4 years ago
4
Throw an error when averaging duration is too small in simulate_temporal_contacts
#37
dburov190
closed
4 years ago
3
WIP: Add tests
#36
glwagner
opened
4 years ago
2
Soliciting tests
#35
glwagner
opened
4 years ago
3
Change argument in ContactGenerator to mean contact duration
#34
glwagner
closed
4 years ago
0
Refactor ContactGenerator and StaticNetworkTimeSeries
#33
glwagner
closed
4 years ago
0
Output times for temporal contacts simulation seem wrong
#32
glwagner
closed
4 years ago
3
"KM" functions in `kinetic_model_helper` replicate functionality implemented elsewhere
#31
glwagner
closed
4 years ago
1
Ease of use issues for `ContactGenerator`
#30
glwagner
closed
4 years ago
2
`ContactGenerator` produces NaNs if `dt_averaging` is too small
#29
glwagner
closed
4 years ago
3
Diurnal contact rate modulation is hard coded
#28
glwagner
closed
4 years ago
1
This average_wjis produces NANs with some random seeds...
#27
odunbar
closed
4 years ago
5
Use `rate` parameter in neighbor-induced diagram to set beta and beta_prime?
#26
glwagner
closed
4 years ago
4
`update_beta_rates` is updating both transmission rate and average contact rates
#25
glwagner
closed
4 years ago
1
Adds an example to replicate the README, plus updates to README
#24
glwagner
closed
4 years ago
1
Use clinical parameters, not pathological parameters
#23
glwagner
closed
4 years ago
1
Removes kinetic model simulator backup file
#22
glwagner
closed
4 years ago
0
Incorrect comments near transition rates in `kinetic_model_simulator.py`
#21
glwagner
closed
4 years ago
1
Data assimilation function: "ensemble adjustment Kalman filter" and not "adjusted Kalman filter"
#20
lubo93
closed
4 years ago
4
WIP networks + node identifiers
#19
lubo93
closed
4 years ago
2
`T` argument to `simulate` function in `epiforecast/risk_simulator.py` violates syntax rules
#18
glwagner
closed
4 years ago
0
Do not inherit from `object`
#17
glwagner
closed
4 years ago
1
Updates README
#16
glwagner
closed
4 years ago
0
WIP: allow for scalar valued clinical statistics
#15
odunbar
closed
4 years ago
1
Ag/risk simulation
#14
agarbuno
closed
4 years ago
0
Disentangling of kinetic model
#13
dburov190
closed
4 years ago
4
Adds convenience function for generating transition rates
#12
glwagner
closed
4 years ago
0
WIP Ag/risk simulation README style wrapper for the Master equation simulator.
#11
odunbar
closed
4 years ago
1
Add data to master branch
#10
dburov190
closed
4 years ago
4
WIP: Data Assimilation and Example in the README framework
#9
odunbar
closed
4 years ago
2
The refactored kinetic modeling
#8
dburov190
closed
4 years ago
4
WIP: the refactored kinetic modeling
#7
dburov190
closed
4 years ago
0
WIP: Helper functions for example epidemic scenarios
#6
glwagner
closed
4 years ago
9
Adds TransitionRates class, updates example and README
#5
glwagner
closed
4 years ago
0
Epiforecast
#4
dburov190
closed
4 years ago
1
Sync README on master with README on develop
#3
glwagner
closed
4 years ago
0
Removes compart.py and main.py
#2
glwagner
closed
4 years ago
1
Adds a skeleton for epiforecast
#1
glwagner
closed
4 years ago
0
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