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thefaylab
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hydra_sim
Code-base for the hydra multispecies simulation model
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add switch for specifying whether to use time varying fishery catchability
#33
gavinfay
closed
1 year ago
0
GB survey index units
#32
gavinfay
opened
1 year ago
4
respecify length bins
#31
sgaichas
opened
1 year ago
9
GB isprey matrix
#30
sgaichas
opened
2 years ago
3
Error in GB diet composition data - only 1 prey per input line
#29
gavinfay
opened
2 years ago
8
Severe overweighting of RecDev penalty, fixed in 745a725
#28
gavinfay
opened
2 years ago
1
recruitment deviation objects should be Nyrs-1?
#27
gavinfay
opened
2 years ago
11
M2 object being reinitialized at each time step
#26
gavinfay
closed
2 years ago
1
M1 inputs need scaling within the tpl to account for Nstepsyr
#25
sgaichas
closed
2 years ago
3
Add likelihood equations to the technical specification document
#24
gavinfay
opened
2 years ago
2
adds simulated data inputs with different bin widths
#23
sgaichas
closed
2 years ago
0
Build hydradata input object for Georges Bank data for mskeyruns.
#22
gavinfay
opened
2 years ago
29
bottom temperature source for intake calculation
#21
sgaichas
closed
2 years ago
4
changes to .dat & .pin files for selectivity
#20
gavinfay
opened
2 years ago
3
change NOBA to have 2 fleets?
#19
gavinfay
closed
2 years ago
4
High Predation Mortalities without other food causing 0's in survey index predictions
#18
gavinfay
opened
2 years ago
0
Update technical specifications with new fishing implementation.
#17
gavinfay
opened
2 years ago
1
changes needed to NOBA input files for new fishing implementation
#16
gavinfay
closed
2 years ago
6
average recruitment option (9) double-exponentiating parameter values
#15
gavinfay
closed
2 years ago
1
figuring out fishing
#14
gavinfay
closed
2 years ago
3
Update README for estimation run
#13
gavinfay
closed
2 years ago
0
Update objective function and predicted value sections with debugging flags.
#12
gavinfay
opened
2 years ago
0
Reformat obs/pred output to single table
#11
gavinfay
closed
2 years ago
1
Add recruitment penalty to objective function
#10
gavinfay
closed
2 years ago
0
realign year indexing in NOBA data files
#9
gavinfay
closed
2 years ago
1
-999 rec devs in NOBA pin file
#8
gavinfay
closed
3 years ago
2
missing column in survey diet proportions time series output from Atlantis
#7
gavinfay
closed
3 years ago
2
NAs in NOBA data file
#6
gavinfay
closed
3 years ago
5
check predicted values and nll for diet prey proportions
#5
gavinfay
opened
3 years ago
0
Predicted values for survey observations
#4
thefaylab
opened
3 years ago
2
common output report table format
#3
gavinfay
opened
3 years ago
0
added proposed data structure
#2
gavinfay
closed
3 years ago
18
Supporting files and info to run hydra_sim
#1
sgaichas
closed
3 years ago
0