thefaylab hydra_sim issues

thefaylab / hydra_sim

Code-base for the hydra multispecies simulation model

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issues

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add switch for specifying whether to use time varying fishery catchability

#33 gavinfay closed 11 months ago
0
GB survey index units

#32 gavinfay opened 1 year ago
4
respecify length bins

#31 sgaichas opened 1 year ago
9
GB isprey matrix

#30 sgaichas opened 2 years ago
3
Error in GB diet composition data - only 1 prey per input line

#29 gavinfay opened 2 years ago
8
Severe overweighting of RecDev penalty, fixed in 745a725

#28 gavinfay opened 2 years ago
1
recruitment deviation objects should be Nyrs-1?

#27 gavinfay opened 2 years ago
11
M2 object being reinitialized at each time step

#26 gavinfay closed 2 years ago
1
M1 inputs need scaling within the tpl to account for Nstepsyr

#25 sgaichas closed 2 years ago
3
Add likelihood equations to the technical specification document

#24 gavinfay opened 2 years ago
2
adds simulated data inputs with different bin widths

#23 sgaichas closed 2 years ago
0
Build hydradata input object for Georges Bank data for mskeyruns.

#22 gavinfay opened 2 years ago
29
bottom temperature source for intake calculation

#21 sgaichas closed 2 years ago
4
changes to .dat & .pin files for selectivity

#20 gavinfay opened 2 years ago
3
change NOBA to have 2 fleets?

#19 gavinfay closed 2 years ago
4
High Predation Mortalities without other food causing 0's in survey index predictions

#18 gavinfay opened 2 years ago
0
Update technical specifications with new fishing implementation.

#17 gavinfay opened 2 years ago
1
changes needed to NOBA input files for new fishing implementation

#16 gavinfay closed 2 years ago
6
average recruitment option (9) double-exponentiating parameter values

#15 gavinfay closed 2 years ago
1
figuring out fishing

#14 gavinfay closed 2 years ago
3
Update README for estimation run

#13 gavinfay closed 2 years ago
0
Update objective function and predicted value sections with debugging flags.

#12 gavinfay opened 2 years ago
0
Reformat obs/pred output to single table

#11 gavinfay closed 2 years ago
1
Add recruitment penalty to objective function

#10 gavinfay closed 2 years ago
0
realign year indexing in NOBA data files

#9 gavinfay closed 2 years ago
1
-999 rec devs in NOBA pin file

#8 gavinfay closed 3 years ago
2
missing column in survey diet proportions time series output from Atlantis

#7 gavinfay closed 3 years ago
2
NAs in NOBA data file

#6 gavinfay closed 3 years ago
5
check predicted values and nll for diet prey proportions

#5 gavinfay opened 3 years ago
0
Predicted values for survey observations

#4 thefaylab opened 3 years ago
2
common output report table format

#3 gavinfay opened 3 years ago
0
added proposed data structure

#2 gavinfay closed 3 years ago
18
Supporting files and info to run hydra_sim

#1 sgaichas closed 3 years ago
0