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theislab / hadge

Comprehensive pipeline for donor demultiplexing in single cell
https://hadge.readthedocs.io/en/latest/
MIT License
24 stars 6 forks source link
deconvolution demultiplexing single-cell

readme

hadge

Nextflow run with conda run with docker run with singularity DOI

Caption

Read the documentation and the associated manuscript

Quickstart

git clone https://github.com/theislab/hadge.git
sh hadge/test_data/download_data.sh
nextflow run main.nf -profile test

Citation

hadge: a comprehensive pipeline for donor deconvolution in single cell

Fabiola Curion, Xichen Wu, Lukas Heumos, Mariana Gonzales Andre, Lennard Halle, Melissa Grant-Peters, Charlotte Rich-Griffin, Hing-Yuen Yeung, Calliope A. Dendrou, Herbert B. Schiller, Fabian J. Theis

bioRxiv 2023.07.23.550061; doi: https://doi.org/10.1101/2023.07.23.550061