issues
search
theislab
/
txsim
3
stars
0
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Question on coexpression_similarity metric (potential bug)
#116
soerenab
opened
3 months ago
0
Metrics cleanup
#115
LouisK92
closed
3 months ago
0
Metrics cleanup
#114
LouisK92
closed
3 months ago
0
normalisation methods
#113
LouisK92
opened
3 months ago
0
Import fix
#112
LouisK92
closed
4 months ago
0
Add function to convert xenium polygons to label image
#111
LouisK92
closed
4 months ago
0
update tangram
#110
hanane9
closed
4 months ago
0
Tangram
#109
hanane9
closed
4 months ago
0
Check if we're always refer to the right layer
#108
LouisK92
opened
4 months ago
0
jensen-shannon metrics
#107
theinvisibleliya
opened
4 months ago
0
Dev into jensen-shannonn
#106
theinvisibleliya
closed
4 months ago
0
Added tangram function
#105
hanane9
closed
5 months ago
0
Dev
#104
LouisK92
closed
5 months ago
0
gene metadata
#103
LouisK92
opened
5 months ago
0
Collect per cell scores
#102
LouisK92
opened
5 months ago
0
Mirakreuzer
#101
Mira-Kreuzer
opened
5 months ago
0
convert polygons to label image
#100
hanane9
closed
4 months ago
0
Fix normalization for gene set size in relative expression similarity across genes
#99
Lilly-May
closed
6 months ago
0
Fixes in relative expression similarity across celltypes
#98
Lilly-May
closed
6 months ago
0
Add cell area and plotting functions to simulation
#97
Lilly-May
closed
6 months ago
0
Fixed binning in local relative expression similarity methods
#96
Lilly-May
closed
6 months ago
0
Fix metric calculation warnings
#95
Lilly-May
closed
6 months ago
1
Get relative expression between celltypes
#94
schaeferti
closed
6 months ago
0
Get relative expression between celltypes
#93
schaeferti
closed
6 months ago
0
Update _metrics.py (pairwise celltype expression)
#92
schaeferti
closed
6 months ago
0
Fix region range in relative_expression_similarity_across_genes
#91
Lilly-May
closed
6 months ago
0
ARI_spots_cluster
#90
benklerc
closed
6 months ago
2
Add local relative expression similarity across genes
#89
Lilly-May
closed
6 months ago
0
Update _metrics.py (gene_expression per celltype)
#88
schaeferti
closed
6 months ago
1
add cell type proportion metrics
#87
RhineCloud
closed
6 months ago
3
Summed cell area and annotation_similarity
#86
Boergmann
closed
6 months ago
3
Number of celltypes
#85
benklerc
closed
6 months ago
0
Add Data Simulation
#84
Lilly-May
closed
7 months ago
1
Celltype density
#83
schaeferti
closed
7 months ago
1
add functions for spot_uniformity_within_cells
#82
RhineCloud
closed
7 months ago
0
Added consistency metrics wrapper
#81
Lilly-May
closed
7 months ago
1
Update _cells_based.py
#80
Boergmann
closed
7 months ago
0
Summed cell area
#79
Boergmann
closed
7 months ago
0
get_number_of_celltypes method added
#78
benklerc
closed
7 months ago
0
Update _cells_based.py (celltype_density)
#77
schaeferti
closed
7 months ago
0
major_celltype_percentage
#76
Mira-Kreuzer
closed
6 months ago
0
Added spot_density statistic
#75
Lilly-May
closed
7 months ago
0
New metric mutually exclusive co-expression rate/negative co-expression purity
#74
LouisK92
opened
7 months ago
0
MIDEC
#73
theinvisibleliya
opened
8 months ago
0
Liya jensen shannon
#72
theinvisibleliya
closed
4 months ago
0
Fixed metrics
#71
habibrehman2002
closed
9 months ago
0
data subsetting and spots coordinates rounding
#70
LouisK92
opened
10 months ago
0
Add data_utils
#69
LouisK92
closed
10 months ago
0
Hack prep hyperparam
#68
LouisK92
closed
10 months ago
0
submodule imports
#67
LouisK92
opened
12 months ago
0
Next