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thelovelab
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tximeta
Transcript quantification import with automatic metadata detection
https://thelovelab.github.io/tximeta/
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Allow setting cache directory via environment variable
#31
csoneson
closed
3 years ago
2
Add splitSE function
#30
csoneson
closed
4 years ago
0
Modified Ensembl GTF parsing error
#29
jma1991
closed
4 years ago
7
biocache file problem
#28
klai001
closed
4 years ago
2
Add txp IDs as CharacterList when summarizing to gene level
#27
mikelove
closed
4 years ago
1
Add info about duplicates to output SE
#26
csoneson
closed
4 years ago
14
Error: Could not connect to database:
#25
Knievl
closed
4 years ago
2
GENCODE transcriptome hashes not recognized
#24
drdariarago
closed
4 years ago
20
Generate Methods section boilerplate text
#23
mikelove
opened
4 years ago
5
Adapt makeLinkedTxome to Salmon 1.0.0 index
#22
csoneson
closed
4 years ago
1
lexical error returned when running makeLinkedTxome
#21
wzmin
closed
4 years ago
14
multiple sample input with type = "alevin"
#20
csoneson
closed
4 years ago
3
Error when making linked txome
#19
Norbittner
closed
4 years ago
8
Also stash ranges in BiocFileCache
#18
mikelove
closed
5 years ago
0
error in addIds
#17
AnnaSawicka
closed
5 years ago
3
Paired txomes (human + mouse Gencode)
#16
mikelove
closed
4 years ago
3
ID conversion and tximport arguments
#15
koenvandenberge
closed
5 years ago
12
Extracting exon-level information
#14
kvittingseerup
closed
5 years ago
2
Missing my favorite organism/source [please add as a comment to this issue]
#13
mikelove
opened
5 years ago
8
Make DGEList example for vignette
#12
mikelove
closed
5 years ago
0
Keep gene ID for non-Ensembl transcriptomes
#11
csoneson
closed
5 years ago
1
Keeping transcript and gene information in the same object - gencode
#10
sorjuela
closed
5 years ago
2
Stand-alone program to upload quant dirs to GEO (from Kaspar Hansen)
#9
mikelove
opened
5 years ago
0
Add argument for manually providing hash (from Nathan Sheffield)
#8
mikelove
closed
4 years ago
1
Renaming duplicate transcripts for Ensembl
#7
mikelove
closed
5 years ago
3
What if one can't connect to internet
#6
mikelove
closed
5 years ago
1
Small differences in derived txomes relative to reference txome (possible?)
#5
ttriche
opened
6 years ago
1
How to ask user only once for best BiocFileCache location
#4
mikelove
closed
6 years ago
0
Proper sequence length and genome for GRC
#3
mikelove
closed
4 years ago
1
Linked transcriptomes (formerly "derived")
#2
mikelove
closed
5 years ago
2
Initial thoughts
#1
PeteHaitch
closed
4 years ago
5
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