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timknut
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geno_imputation
Documentation and code base for the Geno/Roslin imputation project
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Add Affy 25K data + speed up pipeline when rerunning
#37
argju
closed
7 years ago
0
Should replicate #5 in plink_workflow.Rmd
#36
argju
closed
7 years ago
0
Pull request
#35
argju
closed
7 years ago
0
Cleanup, speedup & merge into one plink file per chip
#34
argju
closed
7 years ago
0
Full pipeline from raw genotype data to plink binary format
#33
argju
closed
7 years ago
0
Full pipeline from raw genotype data to plink binary format
#32
argju
closed
7 years ago
0
Full summary of raw data
#31
argju
closed
7 years ago
0
Different positions for same marker in different plink files
#30
argju
opened
7 years ago
10
Update map files
#29
argju
closed
7 years ago
0
SNPchimp data & report + unrelated minor update readmes
#28
argju
closed
7 years ago
0
Move tables from kable to DT
#27
argju
closed
7 years ago
0
More complete code on the first steps
#26
argju
closed
7 years ago
0
fix for commit #16
#25
Unoqualsiasi
closed
7 years ago
0
Duplicate markers in Illumina files
#24
timknut
opened
7 years ago
4
missing code for doing heterozygosity-filtering.
#23
timknut
closed
7 years ago
2
More complete code for the first three steps of the pipeline.
#22
argju
closed
7 years ago
0
More complete code for the first three steps of the pipeline.
#21
argju
closed
7 years ago
0
Update alphaimpute_cluster_run.Rmd
#20
Unoqualsiasi
closed
7 years ago
0
Update alphaimpute_cluster_run.Rmd
#19
Unoqualsiasi
closed
7 years ago
0
small correction
#18
Unoqualsiasi
closed
7 years ago
0
Create alphaimpute_cluster_run.Rmd
#17
Unoqualsiasi
closed
7 years ago
0
Create plink_workflow.Rmd
#16
Unoqualsiasi
closed
7 years ago
1
Update mask_genotypes.Rmd
#15
Unoqualsiasi
closed
7 years ago
0
script_24_08_16
#14
Unoqualsiasi
closed
7 years ago
0
sample_id ID issue Nordic files
#13
Unoqualsiasi
closed
7 years ago
1
seqreport_edit.py question
#12
Unoqualsiasi
opened
7 years ago
0
update
#11
Unoqualsiasi
closed
7 years ago
0
nordick_check_TOP format script added
#10
Unoqualsiasi
closed
7 years ago
0
Illumina TOP alleles
#9
timknut
opened
7 years ago
1
use the 25K data Tim provided in Dropbox
#8
timknut
closed
7 years ago
2
Nordic_54k_2012_ed1_markerlist
#7
Unoqualsiasi
closed
7 years ago
3
Paolo_master
#6
Unoqualsiasi
closed
7 years ago
0
markerlist file FinalReport_54kV1_ed1.txt
#5
Unoqualsiasi
closed
7 years ago
2
Add the summarize rawdata scripts and final table to the Repo.
#4
timknut
closed
7 years ago
0
Have a common rawdata file tree.
#3
timknut
closed
7 years ago
1
Code example for extracting SNP-names from Matrix-format lacking
#2
timknut
closed
7 years ago
1
Merge Paolos comments
#1
timknut
closed
7 years ago
0