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timoast
/
sinto
Tools for single-cell data processing
https://timoast.github.io/sinto/
MIT License
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filterbarcodes cell file format
#69
cathalgking
opened
2 weeks ago
1
sinto filterbarcodes too many temp files
#68
cathalgking
closed
2 weeks ago
4
Gzipped barcode file loading
#67
jonathangriffiths
closed
1 month ago
1
Is the bam filtered by barcodes still sorted?
#66
jase11
closed
2 months ago
1
fix NoneType errors
#65
bgruening
closed
1 month ago
1
SInto pipeline
#64
hesbornomwandho
closed
3 months ago
1
Unable to run
#63
GuiSeSanz
closed
6 months ago
6
Sinto Fragments Output Empty
#62
Tripfantasy
closed
9 months ago
4
Specify a whitelist when adding barcodes
#61
dawe
closed
9 months ago
1
Fuzzy barcode processing
#60
dawe
closed
9 months ago
4
For single end bam file
#59
yoshihiko1218
closed
11 months ago
1
sinto filterbarcodes Remote I/O error
#58
23Niklas
closed
3 months ago
1
Error "No space left on device"
#57
NGroen
closed
3 months ago
1
collapsing reads issue follow-up
#56
rtyags
opened
1 year ago
0
filterbarcodes drops unmapped reads
#55
joycekang
closed
1 year ago
6
keeping unmapped reads in filterbarcodes
#54
anthonybejjani
closed
1 year ago
1
Potential naming issue with import of importlib-metadata package
#53
tilofrei
closed
1 year ago
3
Key Error 'RG' with filterbarcodes
#52
alwhiteh
closed
1 year ago
8
Modified RG tag and duplicated entry after sinto
#51
Zepeng-Mu
closed
1 year ago
6
details of filtering
#50
rtyags
closed
1 year ago
1
Too many open files
#49
nitinnarwade
closed
2 years ago
4
collapsing reads
#48
rtyags
closed
1 year ago
3
scaling with bam size and parallel processing
#47
rtyags
closed
2 years ago
4
error parsing barcode from middle of read name with nametotag
#46
jkgrenier
closed
2 years ago
5
error filterbarcodes with 10x ATAC bam
#45
LiNk-NY
closed
2 years ago
2
error reading barcodes file with `read_cell_barcode_file`
#44
LiNk-NY
closed
2 years ago
2
Single cell RNA seq: cellranger BAM file split by filtered cell barcode as separate file
#43
kulansam
closed
2 years ago
1
Single-Read BAM compatibility
#42
macros29
closed
2 years ago
2
Samtools is not a dependency
#41
macros29
closed
2 years ago
5
Regarding utils::chunk_bam()
#40
hukai916
closed
2 years ago
2
How to deal with the same barcodes when merging the bam files from multiple samples?
#39
zhanglab2008
opened
2 years ago
1
sinto filterbarcodes error - OSError: truncated file
#38
onionpork
closed
2 years ago
3
Move cell barcode from name to bam tag
#37
hukai916
closed
2 years ago
2
Why collapsing reads across cell barcode?
#36
hukai916
closed
2 years ago
4
python
#34
leonvgurp
closed
2 years ago
3
Configurable fragment +/- shift
#33
suragnair
closed
2 years ago
4
Fragments file has size of zero
#32
prmunn
closed
2 years ago
2
Missing Fragments edge case
#31
suragnair
closed
2 years ago
4
Error with addtags on a transcriptome-aligned BAM file
#30
austin-abbvie
closed
2 years ago
5
Sinto fragments: negative positions in output
#29
cflerin
closed
3 years ago
3
Empty bam fles after merging in filterbarcodes
#28
anamariaelek
closed
3 years ago
4
filterbarcodes - Samtools merge failed
#27
rb56
closed
2 years ago
2
sinto installation - problem with python
#26
mirifax
closed
3 years ago
2
sinto bam filement returning a empty fragment filement
#25
qiuqin-wu
closed
3 years ago
3
sinto filterbarcodes returning empty bams
#24
debbie28
closed
3 years ago
2
Memory issue with Add cell barcodes to FASTQ read names function
#23
baigal628
closed
3 years ago
3
empty fragment file
#22
rojinsafavi
closed
3 years ago
5
no fragments produced
#21
rojinsafavi
closed
3 years ago
5
Zero-length fragments generated from Cell Ranger BAM
#20
cflerin
closed
3 years ago
4
Citing Sinto
#19
DrDrLitte
closed
3 years ago
1
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