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tlambert03
/
nd2
Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction
https://tlambert03.github.io/nd2
BSD 3-Clause "New" or "Revised" License
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make 2 utils public
#41
tlambert03
closed
2 years ago
1
Use resource-backed-dask-array, copy dask chunks by default
#40
tlambert03
closed
2 years ago
7
Error loading nd2 from N-SIM
#39
dpshepherd
closed
2 years ago
8
nd2 not working on M1 architecture
#38
zjniu
closed
2 years ago
10
[pre-commit.ci] pre-commit autoupdate
#37
pre-commit-ci[bot]
closed
2 years ago
1
[pre-commit.ci] pre-commit autoupdate
#36
pre-commit-ci[bot]
closed
2 years ago
1
[pre-commit.ci] pre-commit autoupdate
#35
pre-commit-ci[bot]
closed
2 years ago
1
[pre-commit.ci] pre-commit autoupdate
#34
pre-commit-ci[bot]
closed
2 years ago
1
[pre-commit.ci] pre-commit autoupdate
#33
pre-commit-ci[bot]
closed
2 years ago
1
Small update to ND2File.sizes, expose `frame_metadata` method
#32
tlambert03
closed
2 years ago
1
Add check-manifest during deploy
#31
tlambert03
closed
2 years ago
0
Symbols and libraries required in vendored binaries
#30
jaimergp
closed
2 years ago
2
move sdk files into arch subfolders
#29
tlambert03
closed
2 years ago
2
make test dataset easier to get
#28
tlambert03
closed
2 years ago
1
Add pickle test
#27
tlambert03
closed
2 years ago
12
Better dask wrapper that obeys NEP18
#26
tlambert03
closed
2 years ago
1
Hidden issues with DaskArrayProxy no longer hidden: fails to work with NEP18 dispatch mechanism, np forces compute
#25
VolkerH
closed
2 years ago
4
Linux library paths for libnd2readsdk-shared.so not set correctly on install
#24
VolkerH
closed
2 years ago
8
Add support for python 3.10
#23
tlambert03
closed
2 years ago
1
add Dask-proxy
#22
tlambert03
closed
2 years ago
3
Include SDK, move to src layout
#21
tlambert03
closed
2 years ago
2
Add __getstate__ and __setstate__ methods to allow pickling. Addresses #19
#20
VolkerH
closed
2 years ago
5
issues with dask arrays returned by nd2: depend on ND2File being open, can't be pickled
#19
VolkerH
closed
2 years ago
17
[pre-commit.ci] pre-commit autoupdate
#18
pre-commit-ci[bot]
closed
2 years ago
1
Memory usage
#17
fjorka
opened
2 years ago
6
ImportError: libnd2readsdk-shared.so: cannot open shared object file (CentOS)
#16
gioelelm
closed
2 years ago
5
add output to OME metadata using ome-types
#15
tlambert03
closed
1 year ago
1
Add better time-stamp extraction
#14
tlambert03
closed
1 year ago
1
[pre-commit.ci] pre-commit autoupdate
#13
pre-commit-ci[bot]
closed
2 years ago
1
fix coverage
#12
tlambert03
closed
2 years ago
1
allow position arg to asarray
#11
tlambert03
closed
2 years ago
1
Fix-legacy, put more in base readers
#10
tlambert03
closed
2 years ago
1
add copy param to to_dask to avoid segfaults from closed file
#9
tlambert03
closed
2 years ago
1
optional squeeze param for xarray
#8
tlambert03
closed
2 years ago
0
add test that readme executes
#7
tlambert03
closed
2 years ago
1
readme updates
#6
tlambert03
closed
2 years ago
0
general cleanup, full legacy support
#5
tlambert03
closed
2 years ago
1
[pre-commit.ci] pre-commit autoupdate
#4
pre-commit-ci[bot]
closed
2 years ago
0
[pre-commit.ci] pre-commit autoupdate
#3
pre-commit-ci[bot]
closed
2 years ago
0
add support for legacy SDK
#2
tlambert03
closed
2 years ago
1
support open file handles
#1
tlambert03
closed
1 year ago
0
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